Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1144 ATGGTTAGAGCTCCTTATTTTGATGCAAATGGAGTAAAGAAAGGTGCATGGAGTGAGGAAGAGGATAAGATACTCTCGGCTTACGTTGAGAGATGCGGCAACCCAAATTGGCGTCAACTCCCAAAGTACGCAGGCTTGGCAAGATGTGGAAAGAGTTGCAGGCTCCGTTGGATGAATTACCTGCGGCCAAATCTGAAACGAGGGAGCTACACTCAAAAGGAAGAGCAAACAATCATGGATTTACACAAAAAATATGGAAACAAATGGTCTTTGATTGCTGAAAAACTACCCGGAAGAACAGACAACGAGATAAAGAACTACTGGCACAGTCACGTGAAGAAATTGTTAAAGCGCAATGAGACCACATCATCTGATGCTGCTAGTGCTGATTCCCACCACATTTTGGAAAGTACAATTTCCATGTCCTCTGAAATGCCCTGCTACACTGAAAACAACTCCCCTGCTTCTTTTTCCTCTGTTCACACCGAATCAAACGTGAGCTTTACCAGGGAAGAAGATGACATTGCTTCATGGGGAACATTGGATGGATTGAACAGCAGTTTTTGGACAGAACCATTTATTACAGAAAACGCATTCAATCAGAATTACTTTCCAAATTCATGCTACGAGGCAGAGGATACATTTGTCATATGGTAG 657 0.4277 MVRAPYFDANGVKKGAWSEEEDKILSAYVERCGNPNWRQLPKYAGLARCGKSCRLRWMNYLRPNLKRGSYTQKEEQTIMDLHKKYGNKWSLIAEKLPGRTDNEIKNYWHSHVKKLLKRNETTSSDAASADSHHILESTISMSSEMPCYTENNSPASFSSVHTESNVSFTREEDDIASWGTLDGLNSSFWTEPFITENAFNQNYFPNSCYEAEDTFVIW* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1144 218 CDD SANT 69 112 IPR001005 -
Lja3g1144 218 CDD SANT 16 61 IPR001005 -
Lja3g1144 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja3g1144 218 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 209 - -
Lja3g1144 218 SMART sant 66 114 IPR001005 -
Lja3g1144 218 SMART sant 13 63 IPR001005 -
Lja3g1144 218 Gene3D - 7 66 - -
Lja3g1144 218 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja3g1144 218 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja3g1144 218 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g1144 218 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g1144 218 Gene3D - 68 136 - -
Lja3g1144 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja3g1144 218 PANTHER MYB TRANSCRIPTION FACTOR 1 209 - -
Lja3g1144 218 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1144 Lja-Chr3 11920901 11921833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1144 1 198 MYB Transcription Factor Family AT2G31180 47.739 4.34e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1144 Myb_DNA-binding 7.9e-14 CL0123