Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1143 ATGGTAAGAGCTCCTTTCTATGATAAAAATGGACTGAAGAAAGGTGCATGGAGTCAAGAGGAGGATGAGAGGCTAAGAGCTTATATTCAGAGCCATGGTCATTCTAATTGGCGTCAACTCCCCAAGTTTGCAGGTTTAGCTAGGTGTGGGAAAAGTTGCAGACTGCGTTGGTTGAATTACTTAAGGCCAAATCTTAAACATGGAGACTACACCCGAGAGGAAGAAGAAATAATCATCAAATTACACCAACAATTTGGAAAAAGGTGGTCCAAGATTGCTGAAAAACTTCCGGGAAGAACAGACAATGAGATAAAGAATTATTGGCATAGCCATCTAAAAAAGCTCTTAAAGAGCGAAGAGAACACAACAACATATGATCAGTCAAAGTCAAAGGAAGGTGATAATTTTGAAGGAAATGTGAGATCTGAAAGCCCAGAGTCAAATGTTTGTGATGGCATAAATCTTGTTTTAGAAAGTTCATTGCCTGTGTCTACAGAAACCTTAGAAGGAGACAACTATTCCTCTACCTCCTGTTCTGCAATGAACTTGCCCAGACCAAAAGATACTAGTGTTGCTGCTCCATGGGTAATTGAAGATTTCGGTGGCGATTTTTGGACTCAACCCTTCGTTGTAGAAGATTCATATAGCAGTAATGTGATATGTAGTGATGAAGGCATAGCCTTATCGATTCCAAACTTCTACGACGGTGCATATTTGTTGTAG 723 0.3997 MVRAPFYDKNGLKKGAWSQEEDERLRAYIQSHGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGDYTREEEEIIIKLHQQFGKRWSKIAEKLPGRTDNEIKNYWHSHLKKLLKSEENTTTYDQSKSKEGDNFEGNVRSESPESNVCDGINLVLESSLPVSTETLEGDNYSSTSCSAMNLPRPKDTSVAAPWVIEDFGGDFWTQPFVVEDSYSSNVICSDEGIALSIPNFYDGAYLL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1143 240 MobiDBLite consensus disorder prediction 119 139 - -
Lja3g1143 240 PANTHER MYB TRANSCRIPTION FACTOR 1 219 - -
Lja3g1143 240 CDD SANT 16 61 IPR001005 -
Lja3g1143 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja3g1143 240 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja3g1143 240 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g1143 240 CDD SANT 70 112 IPR001005 -
Lja3g1143 240 Gene3D - 13 66 - -
Lja3g1143 240 MobiDBLite consensus disorder prediction 119 147 - -
Lja3g1143 240 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 219 - -
Lja3g1143 240 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja3g1143 240 Gene3D - 68 139 - -
Lja3g1143 240 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g1143 240 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lja3g1143 240 SMART sant 13 63 IPR001005 -
Lja3g1143 240 SMART sant 66 114 IPR001005 -
Lja3g1143 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1143 Lja-Chr3 11910417 11911522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1143 1 116 MYB Transcription Factor Family AT1G06180 68.103 3.57e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1143 Myb_DNA-binding 8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1143 K09422 - gmx:100781032 242.276