Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1141 ATGGCAAGAACACCTTCGTGTGACAAAAGTGGAATGAGGAAAGGAACTTGGACTGCAGAAGAAGATAGAAAATTAATTGCTTATGTTACTAGGTATGGTTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAGAGTTGCAGGTTGAGGTGGTTGAATTATCTAAGGCCTAATATTAAAAGAGGGAACTTCACTCAAGAAGAAGAAGATTGCATCATCAGAATGCTCAAAAAGCTAGGCACTAGGTGGTCTGTCATTGCGGCTGAGTTGCCAGGAAGAACAGATAACGAAGTGAAGAACCATTGGCACACCACCCTCAAGAGAAGAGTTGAAAAACAAACCTCTAATACTAATGAAGAAGCCAAAATAATCTCCAACTCAAAAAATGCAGAACCAACAACAGGAAGGGACTTGGTGACCAAAAATGGAATTGGTTCCCTTCAAGTTACTCCTCCACCAGCAACTTCAATCTCAGACAGCATTGGTGCACTGTCCCCGTTCTCATCCTCCAGTGAGTTCTCTTGCACAACTTCAGATCAGAAGTTGGTGTTTGAAGATGATGACTTTGATTTTCTGGATGCATTTACAGAGCATGTCAATGAAAATTTCTGGTCAGAGCTGCAAATTGATACTAATTATGCTCCTCAAAATCAAGACACTACCGAGATCCTTGATGCTTGTGCATTGTCTCCCAATCAATCTTTGGTCCTTGAGAATGAATTTGGCAGCCTTCTGGATGCACTTACAGAGCCAGCAATTGATAACTTTTGGGGACAGCCATATGTGACTGACACGTGCTATGTGCCTGAATCTGAATATTACTCTACAATATATGATGCAGATCTTTGGAGTCAAAGTACTTTGTATGATGAGCATTATAGCTTGTTATAA 909 0.4158 MARTPSCDKSGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYLRPNIKRGNFTQEEEDCIIRMLKKLGTRWSVIAAELPGRTDNEVKNHWHTTLKRRVEKQTSNTNEEAKIISNSKNAEPTTGRDLVTKNGIGSLQVTPPPATSISDSIGALSPFSSSSEFSCTTSDQKLVFEDDDFDFLDAFTEHVNENFWSELQIDTNYAPQNQDTTEILDACALSPNQSLVLENEFGSLLDALTEPAIDNFWGQPYVTDTCYVPESEYYSTIYDADLWSQSTLYDEHYSLL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1141 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja3g1141 302 CDD SANT 69 112 IPR001005 -
Lja3g1141 302 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja3g1141 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 228 - -
Lja3g1141 302 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 228 - -
Lja3g1141 302 CDD SANT 16 61 IPR001005 -
Lja3g1141 302 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja3g1141 302 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g1141 302 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g1141 302 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja3g1141 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja3g1141 302 Gene3D - 69 140 - -
Lja3g1141 302 SMART sant 66 114 IPR001005 -
Lja3g1141 302 SMART sant 13 63 IPR001005 -
Lja3g1141 302 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1141 Lja-Chr3 11872303 11874977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1141 1 215 MYB Transcription Factor Family AT1G06180 45.116 1.12e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1141 Myb_DNA-binding 2.1e-12 CL0123