Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1140 ATGGCTAGAACACCATCCTGTGACAAAAGTGGACTGAGGAAGGGAACATGGACTGCAGAAGAAGATAGGAAGTTAATTGCTTATGTCACTAGATATGGCTGCTGGAACTGGCGCCAACTCCCCAAATTTGCAGGTCTTGCAAGGTGTGGGAAGAGTTGTAGATTGAGGTGGCTAAATTATCTAAGGCCAGACATCAAAAGAGGGCATTTCACTCAAGAAGAAGAAGAGATCATCATCAGAATGCACAAAAATCTAGGCAATAGATGGTCTATCATTGCGGCTGAGTTACCAGGAAGAACAGATAATGAAGTGAAGAACCATTGGCACACCTCCCTCAAGAGGAGAGTTCAACAGAATGAAGAAGCCAAAGTCTCAAACTCAAAAAATGAAGGACCCACTTCAGGGAATGGAATTGGCTCCCTTCAAGTTACTCCTCCAGCAACTTCTCAAATCTCAGACAGCACTGGTGCACTATCTCCATTCTCATCCTCTAGCGAGTTCTCTTGCATAAGTTCAGATCTGAATACTACTTCTTCCAGCAATGAAAAGTTGGTATTTGAAGATGATTTTGATTTTCTGGATGCATTTGCAGAGCATGTCAATGAAAAGTTCTGGTCAGAGCTTCAAATTGATGCTAATGGTGCTCTTCAAAATCAAGACACTACCCAGATTCTTGATGCTTGTGCATTATCTCCGAATCAATCGTCCAGCCAAAGTTTGGCTCTTGATAATGCCTTGGGCAACTTTCTGGATGCAAACACAGATCCAACAATTGATAATTTTTGGGGACAGCCATATGTTACTGACACGTCCTTTGCGGCTGAATCTGAATATTTTTCTATAGGATACGATGCAGATCTTTGGAGTCAAAGTGATTTGTACGACGAACCTTTTTGCTTATTCTAG 906 0.4194 MARTPSCDKSGLRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYLRPDIKRGHFTQEEEEIIIRMHKNLGNRWSIIAAELPGRTDNEVKNHWHTSLKRRVQQNEEAKVSNSKNEGPTSGNGIGSLQVTPPATSQISDSTGALSPFSSSSEFSCISSDLNTTSSSNEKLVFEDDFDFLDAFAEHVNEKFWSELQIDANGALQNQDTTQILDACALSPNQSSSQSLALDNALGNFLDANTDPTIDNFWGQPYVTDTSFAAESEYFSIGYDADLWSQSDLYDEPFCLF* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1140 301 Gene3D - 14 66 - -
Lja3g1140 301 Gene3D - 68 134 - -
Lja3g1140 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja3g1140 301 SMART sant 66 114 IPR001005 -
Lja3g1140 301 SMART sant 13 63 IPR001005 -
Lja3g1140 301 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 239 - -
Lja3g1140 301 CDD SANT 16 61 IPR001005 -
Lja3g1140 301 MobiDBLite consensus disorder prediction 122 157 - -
Lja3g1140 301 CDD SANT 70 112 IPR001005 -
Lja3g1140 301 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 239 - -
Lja3g1140 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja3g1140 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja3g1140 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g1140 301 MobiDBLite consensus disorder prediction 115 157 - -
Lja3g1140 301 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lja3g1140 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g1140 301 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1140 Lja-Chr3 11868406 11870030 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1140 1 133 MYB Transcription Factor Family AT1G06180 63.768 9.40e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1140 Myb_DNA-binding 2.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1140 K09422 - gmx:100777107 341.273