Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1139 ATGGCAAGAACACCTTCATGTGACAAAAGTGGGATGAGGAAAGGAACTTGGACTGCAGAGGAAGATAGGAAGTTAACTGCTTATGTCACTAGATATGGCTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGAAAGAGTTGCAGATTGAGGTGGTTGAATTATCTAAGGCCTAATATCAAAAGAGGGAACTATACTCAAGAAGAAGAGGAGATCATCATCAGAATGCATAAAAAGCTAGGCAATAGATGGTCTACAATTGCAGCTGAGTTACCAGGAAGAACAGATAATGAAGTGAAGAACCATTGGCATACCAGCCTCAAGAGAAGAGTTCATGAACAGAACGCTACTACCAATCAAGAAACCAAAGTCTTAAACTCAAAAAATGTAGAATCCACTTCAGGGAGGGACCATGTTTCCAAAAATGGAAGTGCTTCCCTACAAGTTACTTTTCCAGAAACTTCCCAATTCTCAGACAGCACGGGTTCACTACCCCCCTTCTCATCCTCCAGTGAATTCTCTTGCATAAGTTCAGAGCTGACTACTACTTCTTCCAGCATTGAAAAGTTAGTGTTTGAAGATGATTTTGATTTTCTGGATGCTTTCACAGAGCATGTCAATGAAAATTTCTGGTCAGACTCAGAGAAATTTGATCTAGCTAACATTTCATACACACCCAATGAAACAGTGATGCAAATTGATACTAATTTTGCTCTTCAGAATCAAGACACTACCCAGATTTTTGATGCTTGTGCATTATCTCCCAATCAATCATCAAGCGACAGTTTGGTTCTTGATAATGACTTGGGCAGTTTTCTAGATGCAAACACAGACCCAACAATTGATGATTTTTGGAGACAGCCATATGTTACAGACACGTCCTTTGCGGCTGAATCTGAATATTTTTCTACAGTATACGATGCTGCAGATGATCTTTGGAGTCAAAGTAATTTGTACGATGAACAACATTTTTGCTTATTCTATTTCTAG 1005 0.399 MARTPSCDKSGMRKGTWTAEEDRKLTAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYLRPNIKRGNYTQEEEEIIIRMHKKLGNRWSTIAAELPGRTDNEVKNHWHTSLKRRVHEQNATTNQETKVLNSKNVESTSGRDHVSKNGSASLQVTFPETSQFSDSTGSLPPFSSSSEFSCISSELTTTSSSIEKLVFEDDFDFLDAFTEHVNENFWSDSEKFDLANISYTPNETVMQIDTNFALQNQDTTQIFDACALSPNQSSSDSLVLDNDLGSFLDANTDPTIDDFWRQPYVTDTSFAAESEYFSTVYDAADDLWSQSNLYDEQHFCLFYF* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1139 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g1139 334 CDD SANT 69 112 IPR001005 -
Lja3g1139 334 SMART sant 66 114 IPR001005 -
Lja3g1139 334 SMART sant 13 63 IPR001005 -
Lja3g1139 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja3g1139 334 CDD SANT 16 61 IPR001005 -
Lja3g1139 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja3g1139 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g1139 334 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lja3g1139 334 MobiDBLite consensus disorder prediction 122 147 - -
Lja3g1139 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja3g1139 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 245 - -
Lja3g1139 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja3g1139 334 Gene3D - 14 66 - -
Lja3g1139 334 Gene3D - 69 141 - -
Lja3g1139 334 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 245 - -
Lja3g1139 334 MobiDBLite consensus disorder prediction 118 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1139 Lja-Chr3 11843095 11844578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1139 1 126 MYB Transcription Factor Family AT1G06180 63.492 3.12e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1139 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1139 K09422 - gmx:100777107 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1139 3 11843095 11844578 Lja3g1139 3 11843095 11844578 ECH