Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1138 ATGGCAAGAACACCTTCATGTGACAAAAGTGGGATGAGGAAAGGAACATGGACTGCAGAAGAAGATAAGAAGTTAATTGCTTATGTCACCAGGTATGGCTGCTGGAACTGGCGCCAACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGCAGATTGAGGTGGTTGAATTATCTAAGGCCTAACATCAAAAGAGGGAATTTCACTCAAGAAGAAGAAGAGATCATCATCAGAATGCACAAAAAGCTAGGCAACAGATGGTCTACCATAGCAGCTGAGTTACCAGGAAGAACAGATAGTGAAGTCAAGAACCATTGGCACACCACCCTCAAGAGAACTGTTCATGAACAGAACACTGTCACAAATGAAGAAACCAAAGTCTCAAATTCAAAAAATGAGAGGGACCCTGTTCCCAAAAGTGGAATAGCATCCCTTCTGGTTACTCCTCCACCAGCAACTTCAATCTCAGGCAGCATTGGTGCACTATCCCCTTTCTCAACCTCTAGCGAGTTCTCATGCACAACTTCAGATCTGACTACTTCTTCCAGCAGTGAAATGTTGGTGTTTGAAGATGACTTTGATTTTCTGGATGATTTTACAGAGAATGTCAATGAAAATTTCTGGTCAGACTTAGAACCATATCTGGCTAACATTTCCAACAAACCAAATGAAACAGAGCTGCAAATTGAGACTAATTGTGCTCTTCAAAATCAAGACAATATCCAGATCCTTGATGCTTGTGAATTGTCTCCCAATCAGTCCTCAAGCGAAAATTTGATCCTTGAGAGTGACTTTGGCTGCTTTCTGGATGAAAACACAGACCGAACACTTGATAATTTCTGGGGACAACCATATGTTACTGACATGTCCTTTGTGCGTGAGTCTGAATATATTTTTATGATGTAG 912 0.4167 MARTPSCDKSGMRKGTWTAEEDKKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYLRPNIKRGNFTQEEEEIIIRMHKKLGNRWSTIAAELPGRTDSEVKNHWHTTLKRTVHEQNTVTNEETKVSNSKNERDPVPKSGIASLLVTPPPATSISGSIGALSPFSTSSEFSCTTSDLTTSSSSEMLVFEDDFDFLDDFTENVNENFWSDLEPYLANISNKPNETELQIETNCALQNQDNIQILDACELSPNQSSSENLILESDFGCFLDENTDRTLDNFWGQPYVTDMSFVRESEYIFMM* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1138 303 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g1138 303 CDD SANT 69 112 IPR001005 -
Lja3g1138 303 Gene3D - 14 66 - -
Lja3g1138 303 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja3g1138 303 CDD SANT 16 61 IPR001005 -
Lja3g1138 303 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja3g1138 303 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g1138 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja3g1138 303 MobiDBLite consensus disorder prediction 117 149 - -
Lja3g1138 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja3g1138 303 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja3g1138 303 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 238 - -
Lja3g1138 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Lja3g1138 303 SMART sant 13 63 IPR001005 -
Lja3g1138 303 SMART sant 66 114 IPR001005 -
Lja3g1138 303 Gene3D - 68 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1138 Lja-Chr3 11830786 11832112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1138 1 230 MYB Transcription Factor Family AT1G06180 43.723 2.77e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1138 Myb_DNA-binding 6.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1138 K09422 - gmx:100777107 320.087