Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1137 ATGGTGAGAACCCCTTCTTTTGACAAAGATGGACTGAAGAAAGGAACATGGACACCTGAGCAAGACGAGAAGTTGGTTGCTTATGTTACTAGGTATGGCCACTGGAATTGGCGTCTACTCCCCAAGTTTGCAGGACTTGCAAGGTGTGGGAAGAGTTGCAGACTCAGGTGGCTGAATTACCTAAGGCCAAACCTCAAGAGAGGGAACTATACTCAAGAAGAGGAGGAGACTATTATCAAGCTGTACAAAATGCTGGGTACCAGATGGTCTGCGATTGCTGCTCAGATGCCAGGAAGATCAGATAACGAAATTAAAAATCACTGGCACACCAACCTCAAGAAGCGATACCAACACAGCTCAATCACAAAATCTCAAGTCTCCAAGCCAAACGACCACTCCCCCGTGCAGGAAACTGCAAACAACATAAATGGTCCTTTCGAAACACTTCAAATCACTCAACTAGCTGATTCATCTTCGCCCGAATCCTCATCCACAAACATGGAGTACACCAATGTTACCAACAATGATGATTATAATCTGGATAGGGAAGTTGAATTTGCCTTTCTGGATTCAGACAGATATGGTGATATGATCAGTGGAAACTTCTGGTTCGAGCCATATATGCTTGACATTTCCTATGCAAAATCAAGTGAAAACTTTGAGTGCTTTAGCCCAGTCTTTGATGCTGAGCTTTGGAGTTGA 702 0.4387 MVRTPSFDKDGLKKGTWTPEQDEKLVAYVTRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGNYTQEEEETIIKLYKMLGTRWSAIAAQMPGRSDNEIKNHWHTNLKKRYQHSSITKSQVSKPNDHSPVQETANNINGPFETLQITQLADSSSPESSSTNMEYTNVTNNDDYNLDREVEFAFLDSDRYGDMISGNFWFEPYMLDISYAKSSENFECFSPVFDAELWS* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1137 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja3g1137 233 SMART sant 13 63 IPR001005 -
Lja3g1137 233 SMART sant 66 114 IPR001005 -
Lja3g1137 233 CDD SANT 69 112 IPR001005 -
Lja3g1137 233 MobiDBLite consensus disorder prediction 117 141 - -
Lja3g1137 233 CDD SANT 16 61 IPR001005 -
Lja3g1137 233 Gene3D - 69 141 - -
Lja3g1137 233 MobiDBLite consensus disorder prediction 154 174 - -
Lja3g1137 233 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 215 - -
Lja3g1137 233 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja3g1137 233 Gene3D - 13 66 - -
Lja3g1137 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja3g1137 233 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g1137 233 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja3g1137 233 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 215 - -
Lja3g1137 233 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja3g1137 233 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g1137 233 MobiDBLite consensus disorder prediction 116 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1137 Lja-Chr3 11822040 11824832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1137 1 199 MYB Transcription Factor Family AT2G31180 47.500 4.69e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1137 Myb_DNA-binding 2.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1137 K09422 - gmx:100778518 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1137 3 11822040 11824832 Lja3g1137 3 11822040 11824832 ECH