Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1136 ATGGTGAATAACATCCTAATGTCATTTGTTTGGTTCTTATTATTCTCCCACGTGATAAGAACCTCTTCTTGTTCCACTTCACTGGAAACTTTAGCCATGAACCAATCAATCAGAGATGGTGAGAGTTTAGTTTCAGCAGGTGGAATCACTGAAGTGGGTTTCTTCAGCCCCGGGAATTCAAAAAGTCGATACTTGGGTGTATGGTACAGAAATGTGTCCCCTTTTACAGTGATATGGGTGGCCAATAGAGAGACACCATTACAGAACAATTCAGGAGTGTTGAAGCTCAATGGAAAAGGGGTTCTTCAGCTCCTCAATGGCACTACTAACAGCGCTATAATTTGGTCATCCAATACAACAAGCAAAGCAGGGAATACGAATAATCCAATCGCTCAGCTCCTGGATTCAGGAAATTTGGTAGTGAAAAAAGGACAGGAAACTGATGACTTTTTGTGGCAGAGTTTTGATTATCCCAGTGATACATTAATGCCAGGAATGAAGCTTGGATGGAACTTGGAAATTGGTCTAGAAAGATTCATATCATCATGGAAAAGTGCTGATGACCCTGCTGAGGGAGAATATGCTAATAAACTTGACATTAGAGGATATCCTCAGGTGATTCAATTCAAGGGATCTCATATAAAAACTAGAACAGGGCCATGGCTCGGCGGGTTCCTTGCTGGATTTCAAGGTCCAATTCCGAGAACGGCACAGAGATTTGTGTTCAATGAAAAAGAAGTGTATTATGAGTTCAAGCTTAATGTAAGCTCAGTTATCAGCATGTTTACACTGTCTCCTTCAGGTGCTTCTCAGACTCTGTTTTGGCCTGTTGGATCGAGCAGCCAGCAAGTGTACTCAACTGCGGAGTTAGATCAATGCGAAAACTATGCCTATTGCAGTGCAAACTCTATATGCAGCATGGAAGGTAACGTTGCAACTTGCGAGTGCTTGAAAGGGTATGTTCCCAAGTTTCCTCAACAGTGGAAGGTGTATTACTGGAAAAACGGTTGTGTTCCGAAGAATGAATCTAATTGCGAAAACAATATTACGCACAAAACAGAGGGCTTCTTCAAGTACACACAAACGAAGTATCCAGACACGTCTTCATCATGGTTTAATAAGAGCATGAACCTTGAGGATTGTAAGGTGGCGTGCCTGAGAAACTGTTCCTGTGTAGCCTGTGCTAATTTAGATACCCGAAATGGGGGAACAGGGTGTTTGCTTTGGTTTAATTATCTCGTTGATGTGAGGAAATTCTCTCAATGGGGACAAGATCTTTATGTCAAAGTTCCTCTTTCAGAACTAGCGGAAAACCATGGAAACATCAAGAAGATAATCGGAATCACAGTTGCTGTGACTATTTCGGGATTAGTTACATGGGGATCAATATGGATGATTAAAAATCCAGGGGCTGCAAGAAATACTTTCAGTTTCAGCAAGCGTTACAAAAGAAACCTAAGGAAGGAAGATGTTGACTTGTCAACGTTTGATTTCTCGGTCTTGGCAAATGCCACTAAAAACTTTTCAAGTGGTAACAAACTTGGAGAAGGTGGCTTTGGTCCAGTATACAAGGGAATGTTGCCAGATGGACAAGAGATAGCTGTGAAAAGGCTTTCGAAAAGATCTGGACAAGGGCTGGAGGAATTTAAAAATGAAGTGGCGCTAATTTCCAAACTTCAGCACCGTAATCTCATAAAGCTTCTTGGTTATTTTATTCAAGGAGAAGAAACAATGTTGATCTATGAATACATGCCCAACAAAAGCTTGGACTACTTTGTTTTTGATGAAACCAAAAGCATGTCACTAGATTGGCTTAAGCGTTTCAATATTATTGGTAGCATTGCTCGTGGACTTCTTTATCTTCATCAAGACTCAAGACTGAGGATTATCCACAGAGATCTAAAAGCTAGCAATATATTACTAGATGTAAATTTGGAACCAAAAATATCAGACTTCGGCTTGGCTCGAATATTTTTGGGAGACCAAATCGAGGATAACACAAATAGAGTGGCTGGAACATATGGTTACATATCTCCAGAGTATGCTGTCCATGGGCATTTCTCAGTAAAGTCTGATGTCTTTAGCTATGGTGTGATTGTACTAGAGATTGTAAGTGGGAAAAAGAACAGGGAATTTTCAGACCCCAAACACCGCCATAATCTTCTTGGATATGCATGGAGATTATGGACTGAAGAGAGAGCGCTGGAACTATTGGATGAAGTGTTACGGGAACAATACACACCATTTGAAGTCATGCGAAGCATACAGGTGAGCCTATTATGCGTGCAACAAAGGCCAGAAGATAGACCAGACATGTCATCTGTGGTTCTAATGCTAAATGGTGAGAAACTATTGCCAAAGCCAAAGGTTCCTGGCTTTTACAATGAAAAGGATTTAAGTGCCGAATCAAATTCTTCACCGGCAAATCACAAATTATGCTCAGTTAATGAATTGTCCATCACGGAGTTAGATGCCAGATAG 2481 0.4083 MVNNILMSFVWFLLFSHVIRTSSCSTSLETLAMNQSIRDGESLVSAGGITEVGFFSPGNSKSRYLGVWYRNVSPFTVIWVANRETPLQNNSGVLKLNGKGVLQLLNGTTNSAIIWSSNTTSKAGNTNNPIAQLLDSGNLVVKKGQETDDFLWQSFDYPSDTLMPGMKLGWNLEIGLERFISSWKSADDPAEGEYANKLDIRGYPQVIQFKGSHIKTRTGPWLGGFLAGFQGPIPRTAQRFVFNEKEVYYEFKLNVSSVISMFTLSPSGASQTLFWPVGSSSQQVYSTAELDQCENYAYCSANSICSMEGNVATCECLKGYVPKFPQQWKVYYWKNGCVPKNESNCENNITHKTEGFFKYTQTKYPDTSSSWFNKSMNLEDCKVACLRNCSCVACANLDTRNGGTGCLLWFNYLVDVRKFSQWGQDLYVKVPLSELAENHGNIKKIIGITVAVTISGLVTWGSIWMIKNPGAARNTFSFSKRYKRNLRKEDVDLSTFDFSVLANATKNFSSGNKLGEGGFGPVYKGMLPDGQEIAVKRLSKRSGQGLEEFKNEVALISKLQHRNLIKLLGYFIQGEETMLIYEYMPNKSLDYFVFDETKSMSLDWLKRFNIIGSIARGLLYLHQDSRLRIIHRDLKASNILLDVNLEPKISDFGLARIFLGDQIEDNTNRVAGTYGYISPEYAVHGHFSVKSDVFSYGVIVLEIVSGKKNREFSDPKHRHNLLGYAWRLWTEERALELLDEVLREQYTPFEVMRSIQVSLLCVQQRPEDRPDMSSVVLMLNGEKLLPKPKVPGFYNEKDLSAESNSSPANHKLCSVNELSITELDAR* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1136 826 Gene3D - 23 155 IPR036426 -
Lja3g1136 826 CDD B_lectin 34 158 IPR001480 -
Lja3g1136 826 ProSiteProfiles Bulb-type lectin domain profile. 28 154 IPR001480 -
Lja3g1136 826 Pfam Domain of unknown function (DUF3403) 785 826 IPR021820 GO:0004674
Lja3g1136 826 Pfam S-locus glycoprotein domain 217 324 IPR000858 GO:0048544
Lja3g1136 826 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 23 823 - -
Lja3g1136 826 Pfam PAN-like domain 350 416 IPR003609 -
Lja3g1136 826 SUPERFAMILY Protein kinase-like (PK-like) 492 788 IPR011009 -
Lja3g1136 826 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 823 - -
Lja3g1136 826 SMART serkin_6 508 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1136 826 ProSiteProfiles PAN/Apple domain profile. 345 431 IPR003609 -
Lja3g1136 826 CDD STKc_IRAK 514 781 - -
Lja3g1136 826 CDD PAN_AP_plant 343 431 - -
Lja3g1136 826 Pfam D-mannose binding lectin 76 184 IPR001480 -
Lja3g1136 826 SMART ntp_6 351 430 IPR003609 -
Lja3g1136 826 Gene3D Hepatocyte Growth Factor 346 428 - -
Lja3g1136 826 Gene3D Phosphorylase Kinase; domain 1 471 583 - -
Lja3g1136 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Lja3g1136 826 Pfam Protein tyrosine and serine/threonine kinase 510 777 IPR001245 GO:0004672|GO:0006468
Lja3g1136 826 Gene3D Transferase(Phosphotransferase) domain 1 584 786 - -
Lja3g1136 826 SMART blect_4 34 158 IPR001480 -
Lja3g1136 826 ProSiteProfiles EGF-like domain profile. 289 326 IPR000742 -
Lja3g1136 826 PIRSF SRK 1 826 IPR024171 GO:0004674
Lja3g1136 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 189 IPR036426 -
Lja3g1136 826 ProSiteProfiles Protein kinase domain profile. 508 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1136 Lja-Chr3 11795723 11799745 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1136 447 794 Receptor kinase-like Gene Family AT4G23190 52.941 6.53e-126 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g1136 PK_Tyr_Ser-Thr 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1136 - - gmx:100776576 1133.24