Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1127 ATGGTGGTGGAGATGCAGAAGTGTGTGCTGTGCAAGGTTCCAGCGAGGACGTTCTGTGAGCCGGAGCGGGCGAGTTTGTGTTGGGACTGCGACGCCAAGGTTCACGGTGCCAACTTCCTGGCCGCGCGGCACTCCAGGATCCTTCTCTGCCACGCGTGCCGCTCTCCCACGCCGTGGAGAGCCTCCGGCGCCAGGCTCAACAGCACCACCGTCTCCGTCTGCGATGATTGCGCCGCCGGAGAAGAGGAAGAGGAAGAGGATGTGAGCGAAGGAGGCAATGAGGAAGAAGTAGACACGGAGGACGGCGATGTTGACGGTGACGGCGTCGGAGACATTCAGGTCGTGCCTTGGTCCTCGACGACGACGCCTCCACCGGCGGCGAGTTCCTCCAGCGGCGAATGGTCGTTGGCTTGCACCAGTAAGTGCAACGACAACAACATAGACGTAGACGATTCTGTTTCTGAACCGTTAACGACAACAGTCTCGTTGAAACGACAGCGTGAGAACGATGATGCTGTCGATCGTGATCTCCAGGAGGGTCCGGACTGTTTGGCATTTCAACGTGGTGGGGAGGTGGAGGACCACGGAGAACCGCCGTTGAAGGAGGGACGGAGGCCGCGTGATGGAGCGTCCGATGCCGTTTGA 645 0.6016 MVVEMQKCVLCKVPARTFCEPERASLCWDCDAKVHGANFLAARHSRILLCHACRSPTPWRASGARLNSTTVSVCDDCAAGEEEEEEDVSEGGNEEEVDTEDGDVDGDGVGDIQVVPWSSTTTPPPAASSSSGEWSLACTSKCNDNNIDVDDSVSEPLTTTVSLKRQRENDDAVDRDLQEGPDCLAFQRGGEVEDHGEPPLKEGRRPRDGASDAV* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1127 214 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 176 - -
Lja3g1127 214 MobiDBLite consensus disorder prediction 114 163 - -
Lja3g1127 214 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Lja3g1127 214 PANTHER - 5 176 - -
Lja3g1127 214 SMART bboxneu5 3 49 IPR000315 GO:0008270
Lja3g1127 214 MobiDBLite consensus disorder prediction 78 214 - -
Lja3g1127 214 MobiDBLite consensus disorder prediction 188 214 - -
Lja3g1127 214 MobiDBLite consensus disorder prediction 78 107 - -
Lja3g1127 214 MobiDBLite consensus disorder prediction 164 178 - -
Lja3g1127 214 CDD Bbox1_BBX-like 7 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1127 Lja-Chr3 11729412 11730224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1127 6 105 C2C2-CO-like Transcription Factor Family AT4G27310 50.962 4.65e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja3g1127 zf-B_box 2.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1127 - - lja:Lj3g3v2888240.1 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1127 3 11729412 11730224 Lja3g1127 3 11729412 11730224 ECH