Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1119 ATGGAATTGACAAGACCCGGTTATGCGGTTATTTATGTCATCCTCCTTTGCGCGTTGGCTCAAGGGGGCTCAGAGGGGAAGAAGGGGAAGGACGAGGATTTTTCTAGCTGTGCTGGTGGAGGACCATCTTTCTCATCTTCCTTTCATGTTCATGGAAAACAGGTAGAAAATGTGGGGAAACATTGCAGGAAAGAATTGGTAGAAAAGAGTAATGATGATGTTAAGGATTTTGACTTGCATTTACTGGAAAGAGGCAGTGACTTGAGGTGTATTCATTTACTAGAAAATGAAATTCCTAAGACAACAAAGTCTCTGTCTCCTGTTATGAGAAAAAAGGTTTTAGATTGCATTAGAAGGAGCACTCCTCCTGCTCCTCCTGTTTCTCAAAAGAAAACTGGCTCTAGATATTTGTTAACAAAACATTCTAGATCAACTTTGGGTTTGGAAAGTGGTCATCATGGAAGAAACTTGATTTCTGATCCTCCACATAATGAGTTATCACCAAGTCCAGCTGGTACAGTTCCATCCCCAGGGCCAGCATTGGAATCACCAACACCAAATCATGGTCCAACACCAGCAAATTCTCCATCATCACCAACTCCAACACCAGAAAATTCTTCACCATCATCAACTCCAAGTCCCACTGCAATGGTGCCGCCAACATCACCACCGCGCCAACATCCTCCTCCTTCTCCTGAAAAATTACAACATGTAACATATGCTCCTGATCCTTCACCTCCTGACAAAGGTGATAGAAAGCAGAAAGCAATTATTTTAGCTGTCACTGTATCAGGAATTATTATCATGATTGGCCTGGCTCTATGCTATCGCGAGTCCAGAAGAAGCGACAGAGCTGACAAAGATGAAGGGCCTTTACTCATATTAACTTCAAGTGATTACTCTGGAGGCAAACAGAAGGTTGTCCGTTTGGGAAATGCTAATAATGAAGGATCTGGTATTAGCAATGGAAAGAAGCCTTCTAATGTTAGAAATTGGTCTATGAAGGCTGGAGATAACAACACCTCAGTGGTTGAGGCAACATCATCAGAAGGTGTGGGACAAGTACCGGAACCTCCTAATGGAAAACCACCCCCTCCACCCCCTGGCCCGCCTCCACCACCGCCACCACGGAAACCACCTGCTCCTGCTCCTCGTCCACCACCACCTCCTAGAGCTGGTCAGCCTCCTCCTGCTCCTCCCAAGCCAGTGAAAGTTGGAAACCAAGGAGCTAATCAGGGAGGTACTAGTGATGGTGATGCTCCAAAACCAAAACTAAAACCATTCTTTTGGGATAAGGTTGCTGCAAAACCTGATCAACAAATGGTGTGGCATGAGATCAGTGCAGGGTCATTCGTGTTCAATGAGGAAAAGATGGAGTCTTTATTTGGCTGTGCCAACCAGAACAGAAATGAACGCAAAAAAGATTCACCATCTGTTGATACATCAGTGCAGTATATTCAGATTATTGACCCTAAGAAAGCACAGAATTTATCAATTCTTTTACGAGCTCTGAATGTGACAACAGATGAAGTTATAGATGCTCTTAGAGAAGGTAATGAGATTCCTGTCGAGCTCATCCAGACGCTGTTGAAGATGGCACCAACAACAGAAGAGGAACTGAAGCTCAGGTTATTCACGGGAGAGTTGTCTCAATTAGGCCCAGCAGAGAGGTTCCTCAAAGTCTTGGTGGACATTCCATTCGCTTTCAAACGTCTTGAAACTCTGCTGTTCATGTTTATCCTTAGAGAAGAGGCCTCAAGCATTAAGGAGTCATTTGCAACATTAGAGGTTGCTAGCGACAAGCTTAGAAAAAGCAGGCTATTCTTAAAATTGCTAGAAGCAGTTCTCAAAACCGGTAACCGCATGAATGATGGCACCTACCGCGGTGGCGCTCAAGCATTCAGGCTGGACACTCTCCTCAAACTCTCAGACGTGAAAGGAACCGACGGAAAGACAACACTGTTACACTTCGTGGTTCAGGAGATCATCCGTTCAGAGGGCATAAGAGCCGTGAGAACCGAGAGAGAAAGCAGAAGTGTTGTTTCCAGCGTGGGAACAGACCAAGACGTCGACGAAAGCCCCGAAGCATCTGAAGAACACTACCGCAGCCTTGGTCTTCAGGTAGTTTCCAGTCTGAGCAACGAACTTGAAGATGTCAAAAGAGCAGCGCTCATAGACGGTGACGCGCTGAGCAGTGCAGTCTCAAAACTCGGACACTCGCTGGCAAAGACGCAGGAGTTTATGAACACTGATCTTAAGAGTTTGGATGAAGAGAGCGAGTTCCAGCGCTGCACAGAGAGGTTCGTGGAGAAGGCGAGGGAGGAGGTGACATGGCTGCAGGAGGAAGAGAAGAGGATCATTGCGCAGGTGAAGAGCACTGCAGATTACTTCCACGGGAATGCAGGGAGGGATGAAGGGTTGCGCTTGTTCTTGATAGTGCGTGATTTCTTGATCATATTGGACAAGGTGTGCAAGGAGGTGAGGGATAAGACTCTGAGGGCGGTGAAGTCTTCTCAGAGGAAAGAGGCTCTTTCCGTGCCGTCTTCTCCTGACACTCGTCATCAGCAGTCGCCGCCGGCACCTTCTGATCTGCATAGGCGGCTATTTCCGGCGATTGCGGGGCGGAGAATAGTTGAGGACTCTAGCTCTGATGATGATGATGATGATCACAAGGAGGGCTCTTCTACATAG 2691 0.4671 MELTRPGYAVIYVILLCALAQGGSEGKKGKDEDFSSCAGGGPSFSSSFHVHGKQVENVGKHCRKELVEKSNDDVKDFDLHLLERGSDLRCIHLLENEIPKTTKSLSPVMRKKVLDCIRRSTPPAPPVSQKKTGSRYLLTKHSRSTLGLESGHHGRNLISDPPHNELSPSPAGTVPSPGPALESPTPNHGPTPANSPSSPTPTPENSSPSSTPSPTAMVPPTSPPRQHPPPSPEKLQHVTYAPDPSPPDKGDRKQKAIILAVTVSGIIIMIGLALCYRESRRSDRADKDEGPLLILTSSDYSGGKQKVVRLGNANNEGSGISNGKKPSNVRNWSMKAGDNNTSVVEATSSEGVGQVPEPPNGKPPPPPPGPPPPPPPRKPPAPAPRPPPPPRAGQPPPAPPKPVKVGNQGANQGGTSDGDAPKPKLKPFFWDKVAAKPDQQMVWHEISAGSFVFNEEKMESLFGCANQNRNERKKDSPSVDTSVQYIQIIDPKKAQNLSILLRALNVTTDEVIDALREGNEIPVELIQTLLKMAPTTEEELKLRLFTGELSQLGPAERFLKVLVDIPFAFKRLETLLFMFILREEASSIKESFATLEVASDKLRKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFRLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIRAVRTERESRSVVSSVGTDQDVDESPEASEEHYRSLGLQVVSSLSNELEDVKRAALIDGDALSSAVSKLGHSLAKTQEFMNTDLKSLDEESEFQRCTERFVEKAREEVTWLQEEEKRIIAQVKSTADYFHGNAGRDEGLRLFLIVRDFLIILDKVCKEVRDKTLRAVKSSQRKEALSVPSSPDTRHQQSPPAPSDLHRRLFPAIAGRRIVEDSSSDDDDDDHKEGSST* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1119 896 ProSiteProfiles Formin homology-2 (FH2) domain profile. 415 846 IPR015425 -
Lja3g1119 896 Gene3D Formin, FH2 domain 421 856 IPR042201 -
Lja3g1119 896 MobiDBLite consensus disorder prediction 145 253 - -
Lja3g1119 896 Pfam Formin Homology 2 Domain 419 820 IPR015425 -
Lja3g1119 896 PANTHER FORMIN-RELATED 1 888 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lja3g1119 896 MobiDBLite consensus disorder prediction 311 349 - -
Lja3g1119 896 PANTHER FORMIN-LIKE PROTEIN 1 888 - -
Lja3g1119 896 PRINTS Proline rich extensin signature 354 379 - -
Lja3g1119 896 PRINTS Proline rich extensin signature 208 229 - -
Lja3g1119 896 PRINTS Proline rich extensin signature 231 247 - -
Lja3g1119 896 PRINTS Proline rich extensin signature 176 192 - -
Lja3g1119 896 PRINTS Proline rich extensin signature 196 208 - -
Lja3g1119 896 PRINTS Proline rich extensin signature 160 172 - -
Lja3g1119 896 MobiDBLite consensus disorder prediction 172 231 - -
Lja3g1119 896 SMART it6_source 415 835 IPR015425 -
Lja3g1119 896 MobiDBLite consensus disorder prediction 838 896 - -
Lja3g1119 896 MobiDBLite consensus disorder prediction 841 859 - -
Lja3g1119 896 MobiDBLite consensus disorder prediction 357 403 - -
Lja3g1119 896 SUPERFAMILY Formin homology 2 domain (FH2 domain) 484 843 - -
Lja3g1119 896 MobiDBLite consensus disorder prediction 311 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1119 Lja-Chr3 11678004 11682736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1119 412 838 FH2 protein (formin) Gene Family AT5G67470 47.685 1.61e-118 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1119 - - lja:Lj3g3v2888350.1 925.62