Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1114 ATGGCTCATAATCTTGTTCAGCCACGTGCAATTCTGCCTGTTCACTTCTTCAAAATCGTCCTTAAAACTAATCTTGAAAGGCTTAAAATACCCAAAAAGTTTACAGAGATGTATGGAGGTGATTTATCAAATCCAGTGTTTCTGAAGCCTCCTGATAGTACTAAATGGGAAGTTTATTGGACAAAACAGAAGGGTGAGATTTGGTTGGAAAATGGCTGGAAACAATTTGCTGAAAATTACTCTCTTGATTATGGGTGCATGGTGGTGTTTAAATATGAAGGGACTTCCAAGTTTGATGTATTCATACTTGACAAAAGTGCCTTAGAAATAGACTATCCTTCCTGTGACAAAAACCATGATCAGGGTGATGATGAAGAAGTTCAATTCTTAGGGGAAAGCCTTGCAGACCAAAAGGCTACACTAAATCCTCCATTCCCGTCTTCTCAACCTTATAAGAGAACGAGAAATGCTTCATCTGTGAATGTGGAAAGAAATTCCAATATGCCAAACTGA 513 0.3821 MAHNLVQPRAILPVHFFKIVLKTNLERLKIPKKFTEMYGGDLSNPVFLKPPDSTKWEVYWTKQKGEIWLENGWKQFAENYSLDYGCMVVFKYEGTSKFDVFILDKSALEIDYPSCDKNHDQGDDEEVQFLGESLADQKATLNPPFPSSQPYKRTRNASSVNVERNSNMPN* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1114 170 PANTHER B3 DOMAIN-CONTAINING 13 166 - -
Lja3g1114 170 SMART B3_2 16 106 IPR003340 GO:0003677
Lja3g1114 170 CDD B3_DNA 15 104 IPR003340 GO:0003677
Lja3g1114 170 Gene3D - 13 107 IPR015300 -
Lja3g1114 170 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Lja3g1114 170 MobiDBLite consensus disorder prediction 138 170 - -
Lja3g1114 170 MobiDBLite consensus disorder prediction 140 170 - -
Lja3g1114 170 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 166 - -
Lja3g1114 170 Pfam B3 DNA binding domain 23 100 IPR003340 GO:0003677
Lja3g1114 170 SUPERFAMILY DNA-binding pseudobarrel domain 15 113 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1114 Lja-Chr3 11595980 11598351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1114 16 148 B3 DNA Binding Superfamily AT3G18990 34.074 3.44e-20 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja3g1114 B3 4.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1114 - - lja:Lj5g3v2241450.1 201.445