Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1109 ATGGTCGAACGGAAGCAATTCAAGACAAGGTTATGCGTGCTTTATCAGAGAGGCCGTTGCAACCGCCATAACTGCTCCTTCGCTCATGGAAATGCTGAGCTTCGACGATTCTCTTCGTCTTACAGTGGTAGGAGAGACTATTCAAGTAATGACTTGAGGGATAAACTTGACAGACGACATTTATCACCTCGGAGGTACTCACCAGCTCGAGATGCAAGAGGCCGCCAGGCAATTCATGAATACAGTCCCCCAAGGTCTTTGGAGAAAAAAAGTTCCAGTGACAGAAAACACAGGAGAAAACAGGGCATCACTTCCCAAAGTGATAATGCTGGGAGTTTGAAAGTCTCCGATAGAGTTCAAGATCATGTTAAAGAAGTAAAATTGCTTTCCTCTGGTTCTAGAAATACTCTTGAGGAGAAGCTGAAGAAAGTACATTCCGATATCAACACACTAGAGAACCAAAAATTCCAACTAACGGTCTACATTGACGAGAGTGTTCAAGAAGTGGATAGCCTTAATTCTAGAATTCAGGAACTGAAGGCTCAATTATGCAATGAGAATGAGGAGTATAAAAGAATTAGTTCAAGAATAAGGAAGTTTGTTAAAGTGCACAATCATAACGTGCAGTTGCAAGATGAACTGAAAAGATCACAGATCCGACTTGAAAGGTTTGGAGATCAGCTTGTATCAGACATATCTAGAATCGGTGCTAATGAGGAAGATTTAAGCGTTGATATTGTAAGCAATGGTGATAATACTGGTCTTCCTCCAATCATCAAAAATAATTTGAACCAGAATGATACATCTCCCTTCAAAAAGAGGCTGCATGTGGAACGAGATGCTGTGGTGGAAGAGTTAAAGCAAGATAGATCAAAACTCGGGCCTTTGGTTGAGACTGTAAGAAGCAGTAAACGCTCTCGCTGGAATGTGCCTTCTCATTTGGATGGCAAGGGTTATGAGGACCTTGAGGCTCCAAACAATGGAACTGAATATACTAGGCCCCTAGATCTTGAAGGCAAGCACAAGAAAGGAATACGGAATCCTTCTGACAACCTCCATTCAGAGAAGTTGAAGGAATCCAGGATTGAAGTGCCATCAACCAGCATAGCAGCTCATATATTTGATGAGGAAGTTGAGATTGAACTTGATGACAGAACTGATATAAATGAAACATCCAACACACAATATCAGAATGGAGTGGCATTTGGGGTGAAGGGCGTCCCTCTTATGCTTCCCCCATCTTTGGTTCCTCATAGCAATTACTCGCAGTATGAGGGTATCGACCAGAATGTGGATGTGGATGGTCTTGATGATGAGGCAGGAAAGGGCACATGA 1335 0.4247 MVERKQFKTRLCVLYQRGRCNRHNCSFAHGNAELRRFSSSYSGRRDYSSNDLRDKLDRRHLSPRRYSPARDARGRQAIHEYSPPRSLEKKSSSDRKHRRKQGITSQSDNAGSLKVSDRVQDHVKEVKLLSSGSRNTLEEKLKKVHSDINTLENQKFQLTVYIDESVQEVDSLNSRIQELKAQLCNENEEYKRISSRIRKFVKVHNHNVQLQDELKRSQIRLERFGDQLVSDISRIGANEEDLSVDIVSNGDNTGLPPIIKNNLNQNDTSPFKKRLHVERDAVVEELKQDRSKLGPLVETVRSSKRSRWNVPSHLDGKGYEDLEAPNNGTEYTRPLDLEGKHKKGIRNPSDNLHSEKLKESRIEVPSTSIAAHIFDEEVEIELDDRTDINETSNTQYQNGVAFGVKGVPLMLPPSLVPHSNYSQYEGIDQNVDVDGLDDEAGKGT* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1109 444 Gene3D - 1 36 - -
Lja3g1109 444 MobiDBLite consensus disorder prediction 334 353 - -
Lja3g1109 444 Gene3D - 85 203 IPR038077 -
Lja3g1109 444 Coils Coil 162 182 - -
Lja3g1109 444 MobiDBLite consensus disorder prediction 39 117 - -
Lja3g1109 444 Coils Coil 134 154 - -
Lja3g1109 444 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 440 IPR045868 GO:0046872
Lja3g1109 444 SUPERFAMILY Troponin coil-coiled subunits 122 198 IPR038077 -
Lja3g1109 444 Coils Coil 207 227 - -
Lja3g1109 444 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Lja3g1109 444 MobiDBLite consensus disorder prediction 47 91 - -
Lja3g1109 444 MobiDBLite consensus disorder prediction 319 353 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja3g1109 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1109 - - aprc:113858008 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1109 3 11540256 11547527 Lja3g1109 3 11540256 11547527 ECH