Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1100 ATGGCTGACAGAGAACACTCCTCTGATAATGTTTCTGCAGATTCTACAGAGAAATCCAGTCAAGCTTCAAATGTGGAATTCTCTGAAGATGAGGAAATCCTTATTACCATGGTTTATAATCTGGTTGGGGAAAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGAACAGCAGAAGAAATAGAGAAGTACTGGACTTCAAGATACTCCACTAGTGAATGA 222 0.4009 MADREHSSDNVSADSTEKSSQASNVEFSEDEEILITMVYNLVGERWSLIAGRIPGRTAEEIEKYWTSRYSTSE* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1100 73 Gene3D - 26 68 - -
Lja3g1100 73 CDD SANT 29 65 IPR001005 -
Lja3g1100 73 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 11 72 - -
Lja3g1100 73 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 73 IPR017930 -
Lja3g1100 73 MobiDBLite consensus disorder prediction 1 26 - -
Lja3g1100 73 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 11 72 - -
Lja3g1100 73 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Lja3g1100 73 SMART sant 23 71 IPR001005 -
Lja3g1100 73 SUPERFAMILY Homeodomain-like 26 69 IPR009057 -
Lja3g1100 73 Pfam Myb-like DNA-binding domain 26 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1100 Lja-Chr3 11448783 11449896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1100 27 70 MYB Transcription Factor Family AT5G14750 50.000 3.61e-12 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g1100 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1100 - - gmx:100500494 123.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1100 3 11448783 11449896 Lja3g1100 3 11448783 11449896 ECH