Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1094 ATGATGTTCCAGCCAAACCTCATGGAAGCTGGTCAGTTTCACCCTTTAGATATGGCTCCCAACACCTCAGAGAGCGACATCCCTCGGCTCCGGGAAGATGAGTTTGACAGCGCCACCAAGTCCGGCAGTGAAAACCATGAAGGCGCATCGGGCGAAGACCAAGAGCCACGTGCCAAGAAGAAGCGTTACCATCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTTTTCAAGGAGTGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTAAGCCGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAAAACAAGCGCACTCAGATGAAGACCCAACATGAACGCCATGAGAACACGTCGCTGAGGACTGAAAATGAGAAGCTTCGAGCAGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCATCTTGTCCTAATTGTGGCGGACCAACCGCTATTGGAGAAATGTCATTTGATGAACATCACTTGAGGATTGAGAATGCACGTCTTAGAGAAGAGATTGAAAGGATTTCATCAATTGCTGCAAAGTACGTGGGCAAGCCAGTGGTGAACTATTCCCATCTCTCATCTCCTCTCCCTCCTCGTCCGTTAGAACTCGGCGTTGGTGGCGGTTTCGGAAGCCAGCCAGGAATCGGTGTGGACATGTATGGAGGTGGAGATATACTGCGGTCAATCACCGGGCCCACCGAAGCGGATAAGCCAATCATAATAGAGCTAGCTGTTGCGGCCATGGAGGAACTCATAGGGATGGCGCAAATGGGTGATCCTCTCTGGTTATCTACACTCGATGGATCTGATGCTGTGCTGAACGAGGATGAATACATCAGATCATTTCCAAGAGGGATTGGACCGAAACCTTCTGGTCTCAAATGTGAAGCTTCTCGTGAAACTGCTGTTGTTATCATGAACCATGTCAGCCTCGTTGAAATTCTCATGGATGTGAACCAATGGTCTACGGTTTTCTCTGCTATAGTCTCAAGAGCAATGACTGTTGAAGTGTTGTCAACTGGGGTGGCCGGGAACTACAATGGCGCTTTACAAGTGATGACAGCTGAGTTGCATGTACCTTCGCCTCTTGTGCCAACTCGTGAGAGTTATTTTGTGAGGTATTGTAAGCAACATGGAGATGGGACTTGGGCAGTTGTGGATGTGTCCTTGGATAATTTGCGCCCTAGTCCTTCAACCAGATCTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGCTACTCAAAGGTGACATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCACAATCTTTACAAGCAGCTTGTTGGGTCTGGACAGGCATTTGGTGCAAAACGTTGGGTTGCAACCTTAGATCGACAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATTCCCACAGTAGATGTTGGAGTGATAACAAGCCAAGAAGGGAGGAAGAGCATGATGAAACTTGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGCGCTTCCACTGCTCATTCATGGACCACAATCTCTGGGACCGGTGCTGATGATGTCAGGGTCACGACCCGGAAGAGTGTGGATGACCCAGGAAGACCTCCTGGTATTGTTCTCAGTGCTGCTACCTCTTTTTGGCTTCCTGTTCCACCTAAACGAGTTTTTGACTTCCTCCGTGATGAGAACAAAAGAAACGAGTGGGATATCCTTTCCAACGGTGGAGTTGTCCAAGAAATGGCACACATTGCAAATGGCCGAGATACTGGGAATTGTGTCTCTCTACTTAGAGTAAATAGTGCAAATTCAAGCCAGAGCAACATGTTGATACTCCAAGAGAGTTGCACTGATTCAACGGGCTCTTTCGTTATTTACGCGCCTGTTGACATTGTTGCCATGAATGTGGTTCTTAATGGAGGAGACCCAGATTATGTAGCACTTCTTCCTTCAGGGTTTGCTATTCTTCCAGATGGAAGTGGCATTGGTGAAACTGGTCCTGGTGGTTCTCTCTTGACTGTGGCATTTCAAATATTGGTTGATTCAATTCCAACGGCTAAGCTTTCTCTGGGATCTGTTGCTACTGTTAATAACCTCATTGCCTGCACTGTTGAACGAATTAAGGCTTCTTTAATTGGTGAAGGTCTTGAGTTCAAAGACTAA 2187 0.4723 MMFQPNLMEAGQFHPLDMAPNTSESDIPRLREDEFDSATKSGSENHEGASGEDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTSLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRIENARLREEIERISSIAAKYVGKPVVNYSHLSSPLPPRPLELGVGGGFGSQPGIGVDMYGGGDILRSITGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLSTLDGSDAVLNEDEYIRSFPRGIGPKPSGLKCEASRETAVVIMNHVSLVEILMDVNQWSTVFSAIVSRAMTVEVLSTGVAGNYNGALQVMTAELHVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSTRSRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVGSGQAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITSQEGRKSMMKLAERMVISFCAGVSASTAHSWTTISGTGADDVRVTTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENKRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGSGIGETGPGGSLLTVAFQILVDSIPTAKLSLGSVATVNNLIACTVERIKASLIGEGLEFKD* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1094 728 SUPERFAMILY Bet v1-like 241 472 - -
Lja3g1094 728 Gene3D - 299 467 IPR023393 -
Lja3g1094 728 SMART START_1 250 470 IPR002913 GO:0008289
Lja3g1094 728 MobiDBLite consensus disorder prediction 1 69 - -
Lja3g1094 728 Pfam START domain 251 470 IPR002913 GO:0008289
Lja3g1094 728 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 15 721 - -
Lja3g1094 728 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Lja3g1094 728 Gene3D - 45 134 - -
Lja3g1094 728 Coils Coil 123 143 - -
Lja3g1094 728 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Lja3g1094 728 CDD START_ArGLABRA2_like 245 469 - -
Lja3g1094 728 Pfam Homeodomain 60 115 IPR001356 GO:0003677
Lja3g1094 728 SMART HOX_1 58 121 IPR001356 GO:0003677
Lja3g1094 728 MobiDBLite consensus disorder prediction 26 59 - -
Lja3g1094 728 CDD homeodomain 60 118 IPR001356 GO:0003677
Lja3g1094 728 ProSiteProfiles START domain profile. 241 473 IPR002913 GO:0008289
Lja3g1094 728 SUPERFAMILY Homeodomain-like 47 117 IPR009057 -
Lja3g1094 728 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 721 IPR042160 -
Lja3g1094 728 SUPERFAMILY Bet v1-like 490 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1094 Lja-Chr3 11389310 11396249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1094 2 722 Homeobox Transcription Factor Family AT1G05230 76.744 0.0 1137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g1094 START 4.2e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1094 K09338 - gmx:100782260 1309.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1094 3 11389310 11396249 Lja3g1094 3 11389310 11396249 ECH
Lja3g3487 3 68676900 68683831 Lja3g1094 3 11389310 11396249 PCT