Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1093 ATGACTGTTGAAGTGTTGTCAACTGGGGTGGCCGGGAACTACAATGGCGCTTTACAAGTGATGACAGCTGAGTTGCATGTACCTTCACCTCTTCAACATGGAGATGGGACTTGGGCAGTTGTGGATGTGTCCTTGGATAATTTGCGCCCTAGTCCTTCAACCAGATCTAGAAGAAGGCCTTCTGGCTGCTTAATTCAAGAAATGCCAAATGGCTACTCAAAGGTAGAAATAATGATAACAAGCCAAGGAGGGAGGAAGAGTATGATGAAACTTGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGCGCTTCCACTGCTCATTCATGGACCACAATCTCTGGGACCGGTGCTGATGATGTCAGGGTCACGACCCGGAAGAGTGTTGATGACCCGGGAAGACCTCCTGGTATTGTTCTCAGTGCTGCTACCTCTTTTTGGCTTCCTGTTCCACCTAAACGAGTTTTTGACTTCCTCCGTGATGAGCACAAAAGAAACGAGGTACGTATGATCCAACCAAGTTAA 528 0.4735 MTVEVLSTGVAGNYNGALQVMTAELHVPSPLQHGDGTWAVVDVSLDNLRPSPSTRSRRRPSGCLIQEMPNGYSKVEIMITSQGGRKSMMKLAERMVISFCAGVSASTAHSWTTISGTGADDVRVTTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDEHKRNEVRMIQPS* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1093 175 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 78 171 - -
Lja3g1093 175 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 78 171 IPR042160 -
Lja3g1093 175 Pfam START domain 2 78 IPR002913 GO:0008289
Lja3g1093 175 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 76 IPR042160 -
Lja3g1093 175 SUPERFAMILY Bet v1-like 84 168 - -
Lja3g1093 175 SUPERFAMILY Bet v1-like 10 79 - -
Lja3g1093 175 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1093 Lja-Chr3 11370005 11371938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1093 1 168 Homeobox Transcription Factor Family AT1G05230 58.898 5.88e-85 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1093 K09338 - sly:101256132 251.521