Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1089 ATGGTTATCAGCAGAACATTGTTCCTTTTGGTTTTCTGCTTGTGGATTCCCTTGGAAGTGGTAGGGAGGACAGGACCTTCAACTACCCCTATGAGTTCTATTTCTTCAAGGCCAAAGGTTGTGAAATTAGGAGCCTTGTTTCCTTTGGACTCTGTCATTGGAAGATCAGCTAGACCTGCAATTATGGCCGCCGTTGATGATGTTAATTCTAATACAAGCATTCTTGCCGGCATTGAACTCCAAGTTATTGTACATGATACAAACTGTAGCGGGTTTATTGGAACAGTGGAAGCTCTGCAGTTGATGGAGAATGATGTGGTAGCTGTTGTTGGTCCTCAGTCATCTGGAATAGGCCATATCATCTCTCATGTTGCTAATGAACTCCATGTACCTCTTCTGTCATTTGGGGCAACTGACCCAACTCTATCAGCTCTGCAATACCCGTATTTTGTACGTACTACGCAGAGTGACTATTATCAGATGTTTGCAATTGCAGATTTAGTTGATTATTACAAATGGAGGGAGGTGATTGCCATTTATGTAGATGATGATAATGGAAGGAATGGAATTGCTGTATTGGGTGATGCTCTGTCAAGGAAACGCGCCAAGATCTCTCACAAGGCTGCATTCCCTCCTGGAGCCACAAAAAGTGAGATCAGTGAGTTGTTAAGTGGAGTAAACTTGATGGAATCGCGGGTCTATGTTCTTCATGTTAATCCTGATTCTGGTCTTGCAATCTTTTCTATTGCCAAAGAGCTAAAAATGATGGGCAATGGTTATGTTTGGATCACTACAGATTGGCTTCCTTCTATGCTGGACTCGTTAGAGCGAGTTGAGACTAGCACAGTGAATCTTTTACAAGGGGTTGTGGCTTTTCGTCATCATATTCCTGATACTGATCTTAAGAAGAATTTTATCTCAAGATTGAAAAGCCTTAAGGACAAGGAGACTGCAAACTTCAATTCATATGCATTTTATGCATATGATTCTGTTTGGTTGGCAGCTCGCGCCCTTGATGTTTATCTTAATGAAGGTGGAATTCTATCTTTTTCCAATGACCCTAGGTTGCATGAAACAGAAGGAAGCATGTTGCATTTAGCATCGCTTCGTACTTTTTCTGGTGGTCAACAGTTTCTGCAGACAATTTTGGGGATGAACTTCACTGGTCTGCGCGGTCAAGTTGAGTTTGACATGGACAGGAATTTAATCCATCCAGCATATGATGTTCTTAATGTTGTTGGTGCTGAATTGCATAAAATTGGTTACTGGTCTAGTCACTCTGGTCTTTCAGTTGTGGCTCCTGAAATTTTATATGTGAAAAACTCATCTAATACCTCTTCAACAAGTAGTCATCAACTTTACAGTGTGATATGGCCTGGAGAGGCCAAAACTACACCTAGGGGATGGGTATTTCCCAACAATGGAAAGAAACTGAGAATAGCAGTTCCAAACCGAGTAAGCTTCAAGGAGTTTGTTGCTAAAGGTAAGAATCCCCCATGGGTACAAGGCTATTCCATCGATATCTTTGAAGCAGCCTTAAAGTTGTTGCCTTATCCTGTGCCGCGACAGTATATATTATATGGAAATGGTGAAAGGAATCCTAACTACAACCAGCTTGTGGAACGGGTTGCACAGAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTGACAAATAGGACAAGGATTGTGGATTTTACTCAACCTTTCATGCCATCAGGGCTTGTTATTGTTGTTCCTTTCAAGGAGGAGAAGTCAAATCCTTGGTCTTTCCTTGTGCCATTCTCTACCCAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTCGTCGGAACTGTTGTGTGGATTCTCGAGCACCGTCTCAATCATGAGTTTCGTGGTCCACCAAGGAAACAACTTATTACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTACTCTTGGGAGATTGGTGCTAATCTTATGGCTTTTTGTGGTGTTAATCATCAATTCAAGCTACACAGCTAGCTTGACATCCATCCTCACAGTGAGGCAACTATCATCACAGATTGAAGGGATTGACAGCTTGATCTCGAGTAATCAACCAATCGGAATCCAAGAAGGGTCGTTTGCGCGGAAGTATCTGATAGATGAGCTCAACATACCCGAATCTAGGATAGTTACTTTGAAAAACATGCAGGGCTACATTGATGCCCTTCAGCGTGGCCCGATAGGTGGAGGGGTTGCAGCAATTGTTGATGAGCGTCCTTATATTGAGGTCTTGATGTCCAGCACCAAATGCAAGTTCACAACTGTTGGGGAAGAGTTCACAAAAAGTGGCTGGGGATTTGCATTCCAGAGGGATTCTCCCCTTGCTGTTGACTTGTCAACTGCTATCCTCCAACTCTCTGAAAATGGGAACATGCAAAAGATTCATGACAAATGGCTTAGCATCAAGGGGTGTGTAACCAATGGTGTTGATTCAAACACGCTATCTCTGACAAGCTTCTGGGGCCTTTTTACTATATGTGGCATTGCATGTGTCCTTGCTCTGATTGTATTCTCTGCTAGAGTGTGCTGTCAATATAACAAGAGCCTCAAGTCTGAGGAGGATGATGAAGAAATTCAACCAACCAGTTCCAGAAGGACAAGTAGAACTTCTAGCTTCAAGGACTTGATCGTTTTTGCAGATAAAAAGGAAACAGAAATTAAAGAGATACTAAGGCAGAGTAAGAAAAGGAGGCACAGCAATAGCTTGGACTTGCAATCCATTTCCACCCACCTAAAGTCACCCTCTGCATTATGA 2814 0.4225 MVISRTLFLLVFCLWIPLEVVGRTGPSTTPMSSISSRPKVVKLGALFPLDSVIGRSARPAIMAAVDDVNSNTSILAGIELQVIVHDTNCSGFIGTVEALQLMENDVVAVVGPQSSGIGHIISHVANELHVPLLSFGATDPTLSALQYPYFVRTTQSDYYQMFAIADLVDYYKWREVIAIYVDDDNGRNGIAVLGDALSRKRAKISHKAAFPPGATKSEISELLSGVNLMESRVYVLHVNPDSGLAIFSIAKELKMMGNGYVWITTDWLPSMLDSLERVETSTVNLLQGVVAFRHHIPDTDLKKNFISRLKSLKDKETANFNSYAFYAYDSVWLAARALDVYLNEGGILSFSNDPRLHETEGSMLHLASLRTFSGGQQFLQTILGMNFTGLRGQVEFDMDRNLIHPAYDVLNVVGAELHKIGYWSSHSGLSVVAPEILYVKNSSNTSSTSSHQLYSVIWPGEAKTTPRGWVFPNNGKKLRIAVPNRVSFKEFVAKGKNPPWVQGYSIDIFEAALKLLPYPVPRQYILYGNGERNPNYNQLVERVAQNNFDAAVGDVTIVTNRTRIVDFTQPFMPSGLVIVVPFKEEKSNPWSFLVPFSTQMWCVTGAFFLFVGTVVWILEHRLNHEFRGPPRKQLITVFWFSFSTMFFSHRENTVSTLGRLVLILWLFVVLIINSSYTASLTSILTVRQLSSQIEGIDSLISSNQPIGIQEGSFARKYLIDELNIPESRIVTLKNMQGYIDALQRGPIGGGVAAIVDERPYIEVLMSSTKCKFTTVGEEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGNMQKIHDKWLSIKGCVTNGVDSNTLSLTSFWGLFTICGIACVLALIVFSARVCCQYNKSLKSEEDDEEIQPTSSRRTSRTSSFKDLIVFADKKETEIKEILRQSKKRRHSNSLDLQSISTHLKSPSAL* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1089 937 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 913 - -
Lja3g1089 937 Pfam Receptor family ligand binding region 58 413 IPR001828 -
Lja3g1089 937 CDD PBP1_GABAb_receptor_plant 42 433 IPR044440 -
Lja3g1089 937 Gene3D - 60 404 - -
Lja3g1089 937 Gene3D - 473 587 - -
Lja3g1089 937 CDD GluR_Plant 476 819 - -
Lja3g1089 937 PIRSF IGluLR_plant 1 936 IPR017103 -
Lja3g1089 937 SUPERFAMILY Periplasmic binding protein-like I 36 470 IPR028082 -
Lja3g1089 937 SMART GluR_14 479 821 IPR001320 GO:0015276|GO:0016020
Lja3g1089 937 Pfam Ligand-gated ion channel 821 850 IPR001320 GO:0015276|GO:0016020
Lja3g1089 937 Gene3D - 708 822 - -
Lja3g1089 937 PANTHER GLUTAMATE RECEPTOR 3.4 31 913 - -
Lja3g1089 937 Gene3D - 156 429 - -
Lja3g1089 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 54 70 - -
Lja3g1089 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 327 339 - -
Lja3g1089 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 114 142 - -
Lja3g1089 937 Gene3D - 588 707 - -
Lja3g1089 937 Pfam Bacterial extracellular solute-binding proteins, family 3 501 820 IPR001638 -
Lja3g1089 937 SUPERFAMILY Periplasmic binding protein-like II 453 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1089 Lja-Chr3 11318995 11325000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1089 31 786 Ion Channels AT1G05200 65.741 0.0 1074
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1089 K05387 - gmx:100802782 1462.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1089 3 11318995 11325000 Lja3g1089 3 11318995 11325000 ECH
Lja3g1089 3 11318995 11325000 Lja3g3490 3 68772159 68791245 PCT