Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1073 ATGCCAAGAATGGTTCACAAAAATCATAACAAGGATAATGGCAATGAAGGTGCATCAAAGGAAGAGGGTGGTGAGGGAATGAAGAAAGGGCCTTGGACGCAAGCCGAAGATGCCATGTTAAGAGAGTATGTGATGAAGTATGGTGAGGGGAATTGGAACTCTGTGCAAAAGAATTCAGGGTTGTCAAGGTGTGGGAAAAGTTGCAGGTTGAGATGGGCCAATCATTTAAGACCTAATCTGAAGAAGGGTGCATTTTCTAAAGAGGAAGAACAAATCATCATCCTCCTTCATGCCAAGCTAGGAAGCAAATGGGCTCAAATGGCCGCACAGTTACCTGGGAGAACAGACAATGAAATAAAGAACTTTTGGAATACCAGAATGAAAAGGCGCCAAAGAGCTGGTTTACCTCTTTATCCTCCAGAAGTATTCCTACAAGAAGCTAAGAACACATACTATCTAGAACAACAAAAGCATAAACAGAACTTTAGATCACAACCTCACTCCCCATCATCCCTATCATTTTCTACATTTTTATCTTCCTCATATCCTCAAGAACTTAATACACTAAGCCACTCCTCCACCACAAACCCCCAACAAAACGTGCCTAATTCTTCTTCTTTAATCAATTCACACCCTCAGTTCAAGTCTCCCAATGACAAATTTGGAATGGTTCTGCCACCATCCACTGTTTCTTCACATGGCTATTCTTTCAACCAGTGTAATTCCATGGCAAGATCTCAACAACAAGACTCACTTTCTTCGAGCCAATCAGCACACGATGGCTCCACCACCCCTACATCATCCCACAATAGTGGTGTTTATGGCTTGATGGGAGCTTCAAGTGGTGTGGCTAATGGCTACTATGAAGATGCTCAAGTGGTGGAGGCTCAAAGTCTTTCTCATAATGACAAGTTAATGAGTGAGGATTCAACTGCAGCAGGGAAAAATTTATCTTGTAATAAGAGGAAAAGCATGACTCAAGAGGATGGCACAATGCTGGTGGAGACAACTATGGAAAATAGTGGTAACTTCACTAATAAGAAACAGAGGAATGATGTGAGCTCTTCTCAATTTTTAACAGGGAAGAAGCTAATTTATGAAGATTCAATGGAGGAATTGAATTCCATGGATGATGACTTATTCAGCCTTCTCAACAATTTCCCATCAGAAGTGCCTGTGCCTGGATGGTACCGCAATGGAGAAAGACAGTCATTAGGACTTGAAACTCAACAAGATGCTTCATCTTCTAGCCCCACAGGTCAAGAATTTGCTTGGACTCTAGGAAATTTCTGGAGCAATGTGCCTAACATATGCTGA 1317 0.4184 MPRMVHKNHNKDNGNEGASKEEGGEGMKKGPWTQAEDAMLREYVMKYGEGNWNSVQKNSGLSRCGKSCRLRWANHLRPNLKKGAFSKEEEQIIILLHAKLGSKWAQMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEVFLQEAKNTYYLEQQKHKQNFRSQPHSPSSLSFSTFLSSSYPQELNTLSHSSTTNPQQNVPNSSSLINSHPQFKSPNDKFGMVLPPSTVSSHGYSFNQCNSMARSQQQDSLSSSQSAHDGSTTPTSSHNSGVYGLMGASSGVANGYYEDAQVVEAQSLSHNDKLMSEDSTAAGKNLSCNKRKSMTQEDGTMLVETTMENSGNFTNKKQRNDVSSSQFLTGKKLIYEDSMEELNSMDDDLFSLLNNFPSEVPVPGWYRNGERQSLGLETQQDASSSSPTGQEFAWTLGNFWSNVPNIC* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1073 438 MobiDBLite consensus disorder prediction 185 216 - -
Lja3g1073 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 76 IPR017930 -
Lja3g1073 438 SUPERFAMILY Homeodomain-like 26 123 IPR009057 -
Lja3g1073 438 Gene3D - 28 81 - -
Lja3g1073 438 PANTHER TRANSCRIPTION FACTOR MYB28-LIKE 9 257 - -
Lja3g1073 438 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Lja3g1073 438 MobiDBLite consensus disorder prediction 242 273 - -
Lja3g1073 438 CDD SANT 84 125 IPR001005 -
Lja3g1073 438 Pfam Myb-like DNA-binding domain 32 91 - -
Lja3g1073 438 CDD SANT 31 76 IPR001005 -
Lja3g1073 438 MobiDBLite consensus disorder prediction 185 227 - -
Lja3g1073 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Lja3g1073 438 PANTHER TRANSCRIPTION FACTOR MYB28-LIKE 234 438 - -
Lja3g1073 438 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 9 257 - -
Lja3g1073 438 MobiDBLite consensus disorder prediction 1 31 - -
Lja3g1073 438 Gene3D - 84 167 - -
Lja3g1073 438 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 234 438 - -
Lja3g1073 438 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Lja3g1073 438 MobiDBLite consensus disorder prediction 1 27 - -
Lja3g1073 438 SMART sant 81 129 IPR001005 -
Lja3g1073 438 SMART sant 28 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1073 Lja-Chr3 11149936 11152400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1073 24 142 MYB Transcription Factor Family AT2G32460 81.513 3.89e-68 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1073 Myb_DNA-bind_6 4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1073 K09422 - gmx:100784779 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1073 3 11149936 11152400 Lja3g1073 3 11149936 11152400 ECH