Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1070 ATGGGGTTGATTAAATCAGCCATTGGAGATGCAATTTTGACATCAATATTTGTGTTCTGCATCTCATCTCTGAGGACTCTCACATTCAAGACATCTCTTTTCCTTGGTCTTCAATCAGTTTTCCTTGCAACCCTCTTCATCTCCACCATCATAAACACCTTCATTGTCCTCACCATTAGCCTAATTGGAAGGGCCTTAGGTGGTGCTAGCTTCAACCCTTCAACCACTGTTTCCTTCTACACTGCAGGATTCAGGCCTGATGCATCACTTTTCTCCATGGCTGTTAGGTTCCCTGCTCAGGCAGCAGGTGGGGTTCTTGGTGTCATGGCCATCCTTGAATTGATGCCAGAACAGTACAAGCACATGGTGAAAGGTCCTTCTTTGAAGGTGGATTTACACACAGGGGCTATAGCAGAAGGGGTGTTGACTTTTACTCATAACTTGGTTATCCTCTTTATCATGTTGAAGGGTCCTAGAAACCCATGGGTGAAGGTGTATTTGCTTTCTGTGGCAACTTTGGTTTTGGTTCTGACAGGCTCTGGATACACTGGGCCTTCTTTGAACCCAGCCAATGCATTTGGATGGGCCTATATGAACAACAAACACAACACTTGGGAGCAATTTTATGTGTTCTGGATTTGCCCTTTGATGGGGGCTGTCTCTGCTGGTTTGGGCTACAGGTTTCTGTTCATGTCACAAACCAAGCAGAAGAAAGCTTGA 720 0.4528 MGLIKSAIGDAILTSIFVFCISSLRTLTFKTSLFLGLQSVFLATLFISTIINTFIVLTISLIGRALGGASFNPSTTVSFYTAGFRPDASLFSMAVRFPAQAAGGVLGVMAILELMPEQYKHMVKGPSLKVDLHTGAIAEGVLTFTHNLVILFIMLKGPRNPWVKVYLLSVATLVLVLTGSGYTGPSLNPANAFGWAYMNNKHNTWEQFYVFWICPLMGAVSAGLGYRFLFMSQTKQKKA* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1070 239 Pfam Major intrinsic protein 4 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g1070 239 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 239 - -
Lja3g1070 239 Gene3D Glycerol uptake facilitator protein. 1 239 IPR023271 -
Lja3g1070 239 SUPERFAMILY Aquaporin-like 2 233 IPR023271 -
Lja3g1070 239 PRINTS Major intrinsic protein family signature 52 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g1070 239 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g1070 239 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g1070 239 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g1070 239 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g1070 239 PANTHER AQUAPORIN SIP1-1 1 239 IPR044222 GO:0015250
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1070 Lja-Chr3 11122836 11124280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1070 1 230 Major Intrinsic Protein MIP AT3G04090 46.087 2.81e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1070 K09875 - gmx:100797126 340.117