Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1066 ATGGAGCTTCGTTCCCGTCGGCGACTCTCCACCACCGCGGCGGTTTCCGAGAAGGAGAAGCAGCAGGAGGATGAGAAGCAGCCTGAGGAAGTTGAAACTAATGGCCAGTGCAGTACTGGTGCTGCTGATGACGATGACGAAGTTTTTGATGTACCTTCCGATCCTGAAGATGAAGACTTTGAGGGGATGCTTTTAGTCTTGAAGGATCAAACTTCAAGCATTAGTGGTTCTGATGGAGAAGATAATGCTTCTGATTCATTTGATGGTAGCAAGTCTTTATCTAAAAGAGGGAAGGCGCAGTCCAGAAGAAAAAGGCGAAAAGTTAACTTGGAAATTGGAGAACCGAGTGGTGTAGAGAGCATGGTGGAGCTTGAGGATGATGAACATTCAATGGTTTTCCATCAAGAAGTCCCCGTCAATTTGATTAATGTGAAAAATAAGAAAAAGGCAAGAAAATCAAGAAAGGAAGATGCTGGGAAACTGTTGTTATGGCATGCTTGGGAAGACGAGCAAGAGAGATGGATTACTGAGAATTTGTCAGAAGATGTTGATTTAGATCAGCACAGTGAACTGATGAATGAAAGTGCTGAGGCACCGTCTGATCTTACTATGCCTTTGCTACGGTATCAAAGGGAATGGTTAGCATGGGCTTTGAAACAAGAAAGTTCTGCGACTAGAGGAGGAATCCTTGCTGACGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCCCTTGTCCTTGCCAAACGTGAGTTCTATCCGATAGGTTGTGAACCAGATGAACCCTCAGCTTCACCAGGGTCATCTAGAGTCTTGCCTTTAATTAAAGCAACACTTGTCATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAATGAGATTAACCGATTTACTTTGAAAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCAAAGCGAGGGAAGAGTGGTGAACATTTTGGGGAGTATGATTTTGTAATAACTACATACTCTATTGTTGAGTCTGAGTACAGAAAGCATATGATGCCTCCTAAGAAGAAGTGCCCATATTGTGGAAAATTATTTTACCATAACAAGTTATCTTTTCACCAGACGTATTTTTGTGGGCCTACCGCTATTAAAACAGAAAAACAATCAAAGCAAAGTAGGAAAAAGGAACTAGATGCCTTTACAAAGAAGCTCAAAGAACCAAGGATCACAAATGAAGACTCAGATGCAGTAGGCCAGGAGAAGTCATTTCTACATGCTGTAAAGTGGTCGAGGATCATATTGGATGAGGCACACTATATAAAATCTAGACATTGTAACACTGCAAAGGCAGTTCTTGCTTTAGAGTCTTCCTACAGATGGGCATTAAGTGGCACACCACTTCAGAACCGTGTCGGAGAGCTATATTCTCTGGTACGGTTTCTGCAAATTGTTCCTTATTCTTATTATTTGTGCAAGGATTGTGATTGCAGGACACTTGACCATAGCTCCTCTAAACAATGTTCAAACTGCTCGCACAGTTCTGTTAGACATTTCTGTTGGTGGAATAAATATATTGCCACACCAATTCAATCATATGGATGTGGTGATTCTGGAAAAAGAGCTATGATATTGCTTAAGAACAAGATTTTGAAGAGCATAGTTTTAAGACGAACTAAACTAGGCAGGGCTGCTGATCTTGCACTTCCGCCTAGAATTGTTTCATTGAGGAGGGATAGCCTGGATATAAAGGAGCAAGACTATTATGAATCATTATACAATGAGAGTCAGGCACAGTTCAATACATATATTCAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTACGTCAGGCTGTTGATCATCCATATCTTGTGGTATATTCTCCATCTGCAGCATCAAAAGTTGGGAACTTGGCTAGCAATGGTAATGGTAATGTTGAACAGGCATGTGGCCTTTGTCATGATGCAGTTGAAGATCCTGTGGTTACCTCGTGTGAGCATACTTTTTGCAAGGGTTGCTTGATAGACTTCTCTTCTTCCTTGGAACAAATATCATGCCCCTCGTGCTCTAAATTACTTACAGTTGATTTAAAATCCAACAAGGATTTGGTGGTGAATACTAAAACCACAATTAAGGGTTTCAGATCCTCAAGCATTTTGAACAGAATTCAGCTCGAGAACTTCCAGACAAGTACTAAAATAGAGGCGTTGAGAGAAGAAATTAGATTTATGGTTGAAAGTGATGGTTCTGCAAAAGGAATTGTTTTTAGCCAGTTCACGTCATTCTTGGATCTCATAAACTACTCCCTGAACAAGTCAGGTGTAAATTGCGTTCAATTGAATGGAAGCATGACATTGGCTGCTCGTGATGCTGCCATTAAAAGATTTACTGATGATCCAGACTGCAGAATTTTTCTCATGAGCTTGAAGGCAGGCGGTATTGCTCTCAATTTGACTGTAGCATCACATGTCTTCCTTATGGACCCTTGGTGGAACCCTGCGGTGGAACGTCAAGCTCAAGATAGAATTCACCGGATAGGGCAATACAAACCAATCAGAATTGTAAGATTTGTCATTGAAAACACTATCGAGGAGAGGATCTTGAAACTTCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTGTTGGTGGCTCTTCTGAGGCTCTGGGGAAATTGACGGAGGCCGACTTGAGATTTCTCTTTGTCACCTAA 2703 0.4162 MELRSRRRLSTTAAVSEKEKQQEDEKQPEEVETNGQCSTGAADDDDEVFDVPSDPEDEDFEGMLLVLKDQTSSISGSDGEDNASDSFDGSKSLSKRGKAQSRRKRRKVNLEIGEPSGVESMVELEDDEHSMVFHQEVPVNLINVKNKKKARKSRKEDAGKLLLWHAWEDEQERWITENLSEDVDLDQHSELMNESAEAPSDLTMPLLRYQREWLAWALKQESSATRGGILADEMGMGKTIQAIALVLAKREFYPIGCEPDEPSASPGSSRVLPLIKATLVICPVVAVTQWVNEINRFTLKGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSIVESEYRKHMMPPKKKCPYCGKLFYHNKLSFHQTYFCGPTAIKTEKQSKQSRKKELDAFTKKLKEPRITNEDSDAVGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRTLDHSSSKQCSNCSHSSVRHFCWWNKYIATPIQSYGCGDSGKRAMILLKNKILKSIVLRRTKLGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYIQANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSPSAASKVGNLASNGNGNVEQACGLCHDAVEDPVVTSCEHTFCKGCLIDFSSSLEQISCPSCSKLLTVDLKSNKDLVVNTKTTIKGFRSSSILNRIQLENFQTSTKIEALREEIRFMVESDGSAKGIVFSQFTSFLDLINYSLNKSGVNCVQLNGSMTLAARDAAIKRFTDDPDCRIFLMSLKAGGIALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTEADLRFLFVT* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1066 900 Gene3D - 359 559 IPR038718 -
Lja3g1066 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 898 IPR027417 -
Lja3g1066 900 MobiDBLite consensus disorder prediction 68 94 - -
Lja3g1066 900 SMART ultradead3 202 492 IPR014001 -
Lja3g1066 900 CDD DEXDc_SHPRH-like 206 547 - -
Lja3g1066 900 Gene3D - 208 349 IPR038718 -
Lja3g1066 900 MobiDBLite consensus disorder prediction 1 112 - -
Lja3g1066 900 Pfam Helicase conserved C-terminal domain 731 844 IPR001650 -
Lja3g1066 900 SMART helicmild6 761 844 IPR001650 -
Lja3g1066 900 CDD SF2_C_SNF 728 855 - -
Lja3g1066 900 SUPERFAMILY RING/U-box 644 691 - -
Lja3g1066 900 ProSiteProfiles Zinc finger RING-type profile. 647 687 IPR001841 -
Lja3g1066 900 SMART ring_2 647 686 IPR001841 -
Lja3g1066 900 MobiDBLite consensus disorder prediction 1 31 - -
Lja3g1066 900 Pfam SNF2-related domain 221 622 IPR000330 GO:0005524|GO:0140658
Lja3g1066 900 PANTHER - 407 735 - -
Lja3g1066 900 PANTHER - 737 897 - -
Lja3g1066 900 MobiDBLite consensus disorder prediction 43 60 - -
Lja3g1066 900 Pfam Zinc finger, C3HC4 type (RING finger) 647 686 IPR018957 GO:0046872
Lja3g1066 900 Coils Coil 717 737 - -
Lja3g1066 900 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 143 390 - -
Lja3g1066 900 Gene3D - 560 898 IPR027417 -
Lja3g1066 900 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 474 IPR014001 -
Lja3g1066 900 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 407 735 - -
Lja3g1066 900 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 737 897 - -
Lja3g1066 900 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 726 890 IPR001650 -
Lja3g1066 900 ProSitePatterns Zinc finger RING-type signature. 662 671 IPR017907 -
Lja3g1066 900 PANTHER - 143 390 - -
Lja3g1066 900 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 719 IPR013083 -
Lja3g1066 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 547 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1066 Lja-Chr3 11072737 11082033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1066 138 900 RAD5 or RAD16-like Gene Family AT1G05120 67.134 0.0 1081
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja3g1066 SNF2_N 2.5e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1066 K15083 - gmx:100786366 1310.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1066 3 11072737 11082033 Lja3g1066 3 11072737 11082033 ECH