Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1060 ATGGTGTGGAACAGAGGTCACACCATAGGCCATGGCTCAACTGCCACCGTCTCCCTCGCCACCTGCAACGGCAGCATCTTCGCCGTGAAGTCCTCAGAGCTATCGAATTCAGAGCCTTTGAAAAGAGAGCAGAGAATTCTATCTTCCCTATGCTGCCCTTATGTGGTTACCTACAAAGGGTGTGACATTACCATGGAGAACAACAAGACCATGTACAATCTCTTCATGGAGTACATGCCCTTTGGCACAGTTGCTCAGGCTACTTGCGGTGGTGGCCGGCTCGAGGAGGCGGCGATCGCGTGCTACACACGGCAAGTTCTGAAGGGGCTGGAGCATTTGCATTCAAATGGGTTGGTGCATTGTGACATCAAGGGTGCCAACATCTTGATTGGTGAAGATGGAGCCAAAGTTGGAGACTTTGGATGTGCCAAGAGTGTTATGGAAACAGCAGAGCCTAATTGCGGCACGCCGGCGTTCATGGCGCCAGAGGTGGCGCGTGGGGATGAACAGGGGTATGCTAGTGATATTTGGTCACTTGGGTGCACTGTGATTGAAATGGCTACTGGTTCTGCACCATGGCCTAATGTGGCAGACCCAGTTTCAGTTCTTTACCATATTGCATTTTCTGATGAGGTTCCTGAGATTCCATGTTTTCTATCTGAGAAAGCAAAGGATTTCCTAGGGAAGTGTTTTATGAGGAATCCACAAGAGAGGTGGAAGGCTAGTCAACTTATGGAGCATCCATTTCTTGTGGAGTTATGTTTCAATTCTAAGCAAGTTTTGAAATCCAATTCAATTTCCCCAACAAGTATTCTTGAACAAGGCTTTTGGAGGTCTATGGAAGAATCAGAAGGTTTTGGAAGTTTGGTCCACACAACTAGTGTTGAGAATTCTTCTCCTGCTGACAGGGTCAGAATGTTAGCTGCATGTTCAGGGGAACAATGTTGGGCATGGCATGATGATGATGGTGATGATGAGAATTGGATCAATGCCAGAGGAAATGAGACAGTAAATGCTCTTGGAAATTGTGGATCCTCTTTCTGTTTTTTTTTTTGTCGAAACCATTAA 1068 0.4672 MVWNRGHTIGHGSTATVSLATCNGSIFAVKSSELSNSEPLKREQRILSSLCCPYVVTYKGCDITMENNKTMYNLFMEYMPFGTVAQATCGGGRLEEAAIACYTRQVLKGLEHLHSNGLVHCDIKGANILIGEDGAKVGDFGCAKSVMETAEPNCGTPAFMAPEVARGDEQGYASDIWSLGCTVIEMATGSAPWPNVADPVSVLYHIAFSDEVPEIPCFLSEKAKDFLGKCFMRNPQERWKASQLMEHPFLVELCFNSKQVLKSNSISPTSILEQGFWRSMEESEGFGSLVHTTSVENSSPADRVRMLAACSGEQCWAWHDDDGDDENWINARGNETVNALGNCGSSFCFFFCRNH* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1060 355 Gene3D Transferase(Phosphotransferase) domain 1 3 307 - -
Lja3g1060 355 Pfam Protein kinase domain 5 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1060 355 SMART serkin_6 3 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1060 355 PANTHER MAP KINASE KINASE KINASE 1 339 - -
Lja3g1060 355 SUPERFAMILY Protein kinase-like (PK-like) 5 295 IPR011009 -
Lja3g1060 355 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Lja3g1060 355 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 339 - -
Lja3g1060 355 CDD STKc_MAPKKK 3 250 - -
Lja3g1060 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 118 130 IPR008271 GO:0004672|GO:0006468
Lja3g1060 355 ProSiteProfiles Protein kinase domain profile. 3 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1060 Lja-Chr3 11006484 11009183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1060 1 334 MAP Kinase Kinase Kinase AT1G05100 51.261 2.16e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja3g1060 Pkinase 1.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1060 K20716 - gmx:100794648 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1060 3 11006484 11009183 Lja6g2437 6 53182211 53183628 ECH
Lja3g1060 3 11006484 11009183 Lja3g1060 3 11006484 11009183 ECH
Lja3g1060 3 11006484 11009183 Lja4g4277 4 76418735 76420517 ECH
Lja3g3505 3 69661923 69663162 Lja3g1060 3 11006484 11009183 PCT