Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1059 ATGGATGATTCAGATCCAAGTGGTACATCCTCCTTTCTTCACAACAATCCAATTGTTCTCAACTCTTTCACCATGGAGGCTAAAGGGTCTTCTTCTTCTCCTTCTTCTTCACCCACACCAACCACCACCAACACCACCATCCCCTTCCAAGTCAACCTCACCTCTCCTATAACAACAACATCATCTCATGAGAATAACATCATCAGAACAGAGGTGGACTTCTTCAAAGACAACAACAGCAATAAGGTTGTTGTCTCTGCTTCTGCCTCTGTCCCAGAAAACAACAACAACAATGATCATCATCATTTGCCCACCCCTTCTTTGTTGGAATTCAAAGTAAACACTGGTCTGAATCTTCTCACTACCAACACTAGCAGTGATCAATCCATGGTGGACGATGGCAATGGCAATGGCATATCACCTAATTCAGATGACAAAAGAACTAAAAATGAGTTGGCTGTTCTTCAAGCTGAGCTAGAGCGAATGAAGGTGGAGAATCACCGGTTAAAGAACACGCTTGAGGAGATGAATACCAATTACAATGCCCTGCAGATGCATTTGGTGAGCATGATGCAGGACCAGAAAACTGAGGATGCTGAAAAACAGGAAGTGTTTGATGGGAAGTTGGAAGAGAAGAAGCAAGGTGCAGCGAATGGTGGTGGGGTTTTGGTTCCAAGGCAGTTTATGGATCTTGGGTTGGCTTCTAATGTTGAGAATGATGAACCCTCTTCTTCATCATTGGGAAGAAGCCAGGATCAATCAGGATCAGCAGGGAATAACATGGAAGTGGGTTCCAAGGAATTGGCTACAATTAAGAATGGGAATGCTAGTGATGAAAGGGAGGATAGTCCTTCAGGTCAAGGTTGTGGTGCTGATAAAGTTCCAAGGTCCAGTCTTCCAAAAAATAATGTTGATCAGGCTGAGGCTACCATGAGGAAGGCTAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCCATGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAATCCATGTCCTCGAGCTTATTATCGATGCACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTGCAAAGATGTGCTGAAGACAAAACAGTCCTCATCACAACCTATGAAGGCAACCACAACCACCCTCTCCCTCCAGCAGCAATGGCAATGGCACAGACCACTTCCTCAGCTGCAAGAATGCTTCTTTCAGGGTCAATGTCAAGCACTGACAACCTTATGAATGCAAACTTCCTGACAAGGACACTCCTTCCATGCTCTTCCAGCATGGCAACAATCTCAGCCTCAGCTCCATTCCCAACAGTCACACTTGACCTCACTCAATCACCAAATCCTCTTAACCCTCTTCAGTTCCCAAGGCCTCCAAACCAGTTGCAAATTCCCTTCCCAGGTGTGAATCCTCAGAATTTTGCAAACTCCCCTGCATCATTAATGCCTCAGATTTTTGGTCAAGCACTCTACAACCAGTCAAAGTTTTCTGGTCTTCAATTGTCACAAGATGCTGCAGCAGGAGCACCAAACCTTGCTGACACAGTTAGTGCTGCCATTGCTACTGACCCAAATTTCACTGCAGCTTTAGCAGCAGCTATCACTTCCATTATTGGTGGTGCTCAACCAAACAACAACAGTGGTGCTACTACTAACAATAATGGCAACATGAATGCCAGCAACAGCAACATCACAAGTAGCAACAACAATAGCAATGGAAAGTAA 1743 0.4515 MDDSDPSGTSSFLHNNPIVLNSFTMEAKGSSSSPSSSPTPTTTNTTIPFQVNLTSPITTTSSHENNIIRTEVDFFKDNNSNKVVVSASASVPENNNNNDHHHLPTPSLLEFKVNTGLNLLTTNTSSDQSMVDDGNGNGISPNSDDKRTKNELAVLQAELERMKVENHRLKNTLEEMNTNYNALQMHLVSMMQDQKTEDAEKQEVFDGKLEEKKQGAANGGGVLVPRQFMDLGLASNVENDEPSSSSLGRSQDQSGSAGNNMEVGSKELATIKNGNASDEREDSPSGQGCGADKVPRSSLPKNNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSTDNLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLNPLQFPRPPNQLQIPFPGVNPQNFANSPASLMPQIFGQALYNQSKFSGLQLSQDAAAGAPNLADTVSAAIATDPNFTAALAAAITSIIGGAQPNNNSGATTNNNGNMNASNSNITSSNNNSNGK* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1059 580 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 43 569 IPR044810 GO:0003700
Lja3g1059 580 SMART WRKY_cls 327 387 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g1059 580 MobiDBLite consensus disorder prediction 237 263 - -
Lja3g1059 580 ProSiteProfiles WRKY domain profile. 322 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g1059 580 Pfam WRKY DNA -binding domain 329 386 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g1059 580 MobiDBLite consensus disorder prediction 26 49 - -
Lja3g1059 580 Gene3D WRKY domain 312 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g1059 580 MobiDBLite consensus disorder prediction 546 580 - -
Lja3g1059 580 Coils Coil 145 186 - -
Lja3g1059 580 MobiDBLite consensus disorder prediction 236 309 - -
Lja3g1059 580 MobiDBLite consensus disorder prediction 122 143 - -
Lja3g1059 580 PANTHER OS05G0567200 PROTEIN 43 569 - -
Lja3g1059 580 SUPERFAMILY WRKY DNA-binding domain 320 388 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g1059 580 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1059 Lja-Chr3 10976846 10980364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1059 71 560 WRKY Transcription Factor Family AT1G62300 51.085 1.62e-132 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja3g1059 WRKY 3.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1059 - - gmx:100127384 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1059 3 10976846 10980364 Lja6g2439 6 53201051 53203714 ECH
Lja3g1059 3 10976846 10980364 Lja3g1059 3 10976846 10980364 ECH
Lja3g3512 3 69752971 69756205 Lja3g1059 3 10976846 10980364 PCT