Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1051 ATGTTTAACGGTATGATGGATCCTGAGTTGATGAGGATCGCTCAGGAACAGATGAGTCGCATGTCACCCGCTGAATTGGCTCGGATCCAACAACAGATGATGTCCAATCCGGAGTTGATGAGGATGGCATCTGAAAGCATGAATAACATGAACCCTGAAGACTTGAAGCGTGCTGCTGAGCAGTTAAAGCATACCCGTCCCGAGGAAATGGCTGAGATTGGCGAGAAGATGGCCAGTGCGACACCGGATGAAGTAGCAGCTATGCGTGCTCGTGTTGATGCTCAGATCAAATATCAATTGAATGCAGCTGAGATGTTGAAGAAGCAGGGAAATGATCTTCACAATCAAGGAAGGTTCAATGATGCTTTGCAGAAGTATAAGCTTGCTAAGGAAAACATTAAAGACATTCCATCTTCTCAAAGTGGAAAGCTTATTTTGGCGTGCTCACTTAACTTGATGTCTTGTTACTTGAAGACAAGGCAGTATGATGAATGCATAAAAGAAGGTTCTGAGGTCTTGGCATATGATGCGAAGAACCTTAAGGCACTTTATCGAAGAGGTCAAGCATACAAGGAACTGGGCCTGCTAAATGATGCTGTTACTGATTTGAGCAAAGCACTTGAAGTATACCCAGATGATGATACAATTGCAGAGCTTTTACGGGACACCAAGGAAGAATTGACAAAGGGAGGTAGTGATTGTGCACCTAGAAGATTAGTAATTGAAGAAATAACTGAAGAAGTAGAGGATGTGCCTTCTGGAAACAACAAAAGCTCTTCTTTGGAACAAACAGTGGTTCAACCAAAAAAATCTGGTGGCTCCTCTAAAAGTGGCAGTATTGCTAACAGTGGAAATCCAAAAACAAACACAGACAGTATCGATGCATTGAAAAAAGATCCAGAAGCAATCAGATCATTCCAAAACTTCATTTCAAGTGCCGATCCTTCCACTCTGGCTTCTTTGAACATGGGACAATCCAATAATGTGTCTCCAGATATGATTAAAGCTTCCTCAGATATGATTAGCAAGATGTCACCTGAGGAACTTCAAAAAATGCTTGACATGGCGTCTTCGTTTCAAGGGGACAACCCATTTTTCAGAGGAGGTTCCACTGATTCTCCTTTGAACCCTGGATCTATTCCTCCCAATGTGACGCCTGACATGTTTAAAACAGCGAGTGACATGATAAGTAAAATGCCAGCAGATGACCTTAAGAAGATGTTTGAAATGGCATCCGTACTTAAGGGGAAGGAATCTATTCCATCAGCAGCAGCCGTAGACAGGAATGAAAGAAATGTTTCCCAGTCAAACTTCCCATCCTCAAGTAGTAACGGAACTCATGCTTTTGGAGAATCAAGTTCTTCTCAAAATTTGTTTTCAAATATGAGAAATGCTTCTCCGCCAAATTTCCCTTCCTCAAGTGCTGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGCAGATGTTCACATCAATGATTAAAAATATGAGCCCGGAAATGATGGCAAACATGGGAGAACAATTTGGTGTCAAGCTCTCACCTGAAGAGGCAGCAAAAGCTCAGCAAACCATGTCGTCCTTCTCACCAGAAAGCTTGGATAAAATGATGCTTTGGGCGGACAGGCTTCAAAGAGGATTTGAAGGTGCGAAGAAGACAAAGAACTGGCTGCTAGGGAAACCAGGCATGATCTTAGCAATATTCATGCTCATTTTGGCTATCATTCTTCACCGGTTTGGCTTCATTGGTAGCTAG 1767 0.425 MFNGMMDPELMRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMNNMNPEDLKRAAEQLKHTRPEEMAEIGEKMASATPDEVAAMRARVDAQIKYQLNAAEMLKKQGNDLHNQGRFNDALQKYKLAKENIKDIPSSQSGKLILACSLNLMSCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLNDAVTDLSKALEVYPDDDTIAELLRDTKEELTKGGSDCAPRRLVIEEITEEVEDVPSGNNKSSSLEQTVVQPKKSGGSSKSGSIANSGNPKTNTDSIDALKKDPEAIRSFQNFISSADPSTLASLNMGQSNNVSPDMIKASSDMISKMSPEELQKMLDMASSFQGDNPFFRGGSTDSPLNPGSIPPNVTPDMFKTASDMISKMPADDLKKMFEMASVLKGKESIPSAAAVDRNERNVSQSNFPSSSSNGTHAFGESSSSQNLFSNMRNASPPNFPSSSADLQEQMRNQMKDPAMRQMFTSMIKNMSPEMMANMGEQFGVKLSPEEAAKAQQTMSSFSPESLDKMMLWADRLQRGFEGAKKTKNWLLGKPGMILAIFMLILAIILHRFGFIGS* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1051 588 MobiDBLite consensus disorder prediction 422 475 - -
Lja3g1051 588 SMART tpr_5 180 213 IPR019734 GO:0005515
Lja3g1051 588 SMART tpr_5 103 136 IPR019734 GO:0005515
Lja3g1051 588 SMART tpr_5 146 179 IPR019734 GO:0005515
Lja3g1051 588 MobiDBLite consensus disorder prediction 428 475 - -
Lja3g1051 588 SUPERFAMILY TPR-like 95 224 IPR011990 GO:0005515
Lja3g1051 588 MobiDBLite consensus disorder prediction 249 293 - -
Lja3g1051 588 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Lja3g1051 588 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Lja3g1051 588 MobiDBLite consensus disorder prediction 251 291 - -
Lja3g1051 588 Gene3D Tetratricopeptide repeat domain 89 232 IPR011990 GO:0005515
Lja3g1051 588 PANTHER OUTER ENVELOPE PROTEIN 61 59 588 - -
Lja3g1051 588 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 59 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1051 Lja-Chr3 10906803 10911983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1051 99 227 Calmodulin-binding Proteins AT5G48570 33.333 2.94e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1051 - - cam:101514495 917.916