Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1050 ATGGAGGTTCCTCCTCCGAATGATGACCAAAATCGACGAAGAGGGAGAAAGAAGATACCCAAGCCACTGTTGCTATGGCAACAGTGGGAAAGCGAGGACCGGAAATTCGTTGAAGAGAAGATGCGAGAAGAAGAACAAGATTCCGCCGGTAATGGGAAAGAAGAATTGACGGTGGAAACCGCCGAGCCTTCCTCTGATCTCACCGTACCTCTACTCAGGTACCAGAAGGAATGGCTAGCGTGGGGTTTGAATCAAGAAAATTCTCCTGTTAGAGGTGGAATTCTCGCAGATGAAATGGGGATGGGGAAGACTATTCAAGCAATTGCCCTTGTTCTTGCCAAACGTCAAGAATTGCGACAAACGGGTCGCGAAATTGAAGACGAATGGGTACCTTCAACCTCAGGTTCTTTTGCTACATGGTTGCCTGCGATCAAAGGAACGCTTGTTGTTTGTCCCCCGGTCGCTGTCTCTCAATGGGTCAACGAAATTGATCGCTTTACTGTCAAAGGAAGCACCAAGGTGCTGGTCTATCATGGAGCTAACAGAGTGAAGAGCCGCGACCAGTTCTCGGAGTTTGATTTTGTTATAACTACTTACTCTATTGTTCAGTCTCAGTACAAGAAGGCCATGAGTGAATGTCTCTGTTGTGGAAACATGTTTTTGGAGCCTAATTCTCGTCAAGACCATGTTTGTAGGCCTCATGTTAGAGCTGAAAATCCACCACTTCTACATGCTGTAATGTGGCAGCGGATCATATTGGATGAGGCGCACTATATAAAAGCTATACATGGCAGCACTACTAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAAATGGGCATTAAGTGGCACTCCCCTTCAGAACAATGTCGGAGAGCTGTATTCTCTGGTGCGGTTCCTGCAAGTTACTCCTTATGCCTACTTATTGTGCAAGGACTGTGATTGTAAGATTCTTGAGAAGAAAAGAAATGAAAAATGTTCGAAATGCAGCCATGGTACTTCAAGGCATTTCTCTTGGTGGATTAAATTAAATAGGAACAGAGGTAGTATGTTATTGGTTAAACACAAAATTTTGAAGAACATAATGCTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCGTTTCCAGAAAAAATTATTTCAGTGAGAAGAGTCTACCTGGACGTAAAGGAGCAAGACTATTACAAGTCAACATGTATTGAATGTCTGAAATCGGTTAATACATATGTTGAAGCAAATATTGTGATGAATCATTATGCTGATATATTTGGTCTCCTCACGAAGCTGCGTCAGGCTGTTGATCACCCATACCTTGTGGTATATTCTAAACCTGAAGCGTTAAAAGGGGGAGGTGTGGCAGCAAGTGATGGTACTGTTGAACAAGTATGTGGCATTTGTGATGAGCCAGTGGAAGACCCTGTAGTTACCTCTTGTGAGCATGTATTTTGTAATGCATGCCTAGTAGACTTCTCTGCTTCCATGGATCCAGTGCTATGCCCCTCATGCTCTCTACCAATAACTGTTGAGATAACTTCCAGCAAGGATGTCAGTGGCAAGTCTAATGATACAGCAATTAAGGGTTTCAGATCATCAAGCATCTTATACAAAATTGAGCTTGAGAACTTTCAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAAATATATTTCATGATTCAAAGAGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTGGATCTTATAAATTACTCTTTGGTCAAGTCTGGAGTATCTTGTGTTCAATTGAATGGAAGCATGTCATTGACTGCTCGGGATGCTGCCATTAAAAGATTTAATGATGATCCAGACTGCAGAATTTTTCTCTTGAGTTTGAAGGCGGCTGGTGTTGCCCTCAATTTGACTGTAGCATCTCATGTTTTCCTCATGGAGCCTTGGTGGAACCCAGGCGTAGAGCAACAGGCTCAGGATAGAATTCACCGAATAGGGCAAAATAAACCTATAAGAGTTGTGAAGTTTATCACAGAGAACACCATCGAGGAGAGGATTCTGAAGCTGCAGCAGCAGAAGGAAGCAGTGTCTGAAGGGCTAATAGACGGCTCTTCTGAAGCTTTGGGGAGATTGAAACTGTCCGAGATGATAAACCTGTTTGGATTTTAA 2157 0.4298 MEVPPPNDDQNRRRGRKKIPKPLLLWQQWESEDRKFVEEKMREEEQDSAGNGKEELTVETAEPSSDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKRQELRQTGREIEDEWVPSTSGSFATWLPAIKGTLVVCPPVAVSQWVNEIDRFTVKGSTKVLVYHGANRVKSRDQFSEFDFVITTYSIVQSQYKKAMSECLCCGNMFLEPNSRQDHVCRPHVRAENPPLLHAVMWQRIILDEAHYIKAIHGSTTKAVLALESSYKWALSGTPLQNNVGELYSLVRFLQVTPYAYLLCKDCDCKILEKKRNEKCSKCSHGTSRHFSWWIKLNRNRGSMLLVKHKILKNIMLRRTKIGRAADLAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVEANIVMNHYADIFGLLTKLRQAVDHPYLVVYSKPEALKGGGVAASDGTVEQVCGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCPSCSLPITVEITSSKDVSGKSNDTAIKGFRSSSILYKIELENFQTSTKIEALREEIYFMIQRDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSSEALGRLKLSEMINLFGF* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1050 718 MobiDBLite consensus disorder prediction 37 52 - -
Lja3g1050 718 SUPERFAMILY RING/U-box 461 508 - -
Lja3g1050 718 Pfam Zinc finger, C3HC4 type (RING finger) 464 503 IPR018957 GO:0046872
Lja3g1050 718 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 242 554 - -
Lja3g1050 718 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 544 708 IPR001650 -
Lja3g1050 718 SMART ring_2 464 503 IPR001841 -
Lja3g1050 718 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 9 222 - -
Lja3g1050 718 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 556 709 - -
Lja3g1050 718 Gene3D - 530 712 IPR027417 -
Lja3g1050 718 SMART ultradead3 67 319 IPR014001 -
Lja3g1050 718 PANTHER - 242 554 - -
Lja3g1050 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 365 IPR027417 -
Lja3g1050 718 ProSitePatterns Zinc finger RING-type signature. 479 488 IPR017907 -
Lja3g1050 718 Gene3D - 37 390 IPR038718 -
Lja3g1050 718 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g1050 718 CDD SF2_C_SNF 546 673 - -
Lja3g1050 718 MobiDBLite consensus disorder prediction 1 15 - -
Lja3g1050 718 PANTHER - 9 222 - -
Lja3g1050 718 PANTHER - 556 709 - -
Lja3g1050 718 ProSiteProfiles Zinc finger RING-type profile. 464 504 IPR001841 -
Lja3g1050 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 717 IPR027417 -
Lja3g1050 718 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 84 303 IPR014001 -
Lja3g1050 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 529 IPR013083 -
Lja3g1050 718 CDD DEXDc_SHPRH-like 71 365 - -
Lja3g1050 718 SMART helicmild6 579 662 IPR001650 -
Lja3g1050 718 MobiDBLite consensus disorder prediction 37 62 - -
Lja3g1050 718 Pfam SNF2-related domain 85 440 IPR000330 GO:0005524|GO:0140658
Lja3g1050 718 Pfam Helicase conserved C-terminal domain 548 662 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1050 Lja-Chr3 10898078 10904803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1050 242 716 RAD5 or RAD16-like Gene Family AT1G05120 62.140 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja3g1050 SNF2_N 1.7e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1050 K15083 - gmx:100798333 892.878