Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1046 ATGAGTGACATACGAAAGTGGTTCATGAAATCACATGAAAAGGCAAACAATGCCGCTGCTCCCAAACCTTCCAATCCACCCAAGCCTTCTTCTGCGGTCAAACCCGACCCGGACAAAACGGTGCCGGAAGGTCAAGGAAGTTCAGGGAGAAAGATAACTAGCAAATATTTTAATAAAGATAAACAAAAGCCGAAAGATGAGAAAGAAACCCAGGAGCTCCCTGCTAAGAGAAAGAATGGGAAGGACTGCGAGGAGTTACCGGAGTCTCGTCCTTTGAAGAAAATTCACAAAGCTGATGAGGATGAGGGAGATGATGACTGTGTCTTGGTGGCTGGTAAGAAGAAGGTAGCTGATTCCACGCCAACAAAGAAATTGAAGAGTGGATCGGGTAGGGGGGTCCCCAAGAAATCTGCGGATTTGGAAGAAGATGATGAAGATGATGGGAAAGAAGCTGCCACTCCTGCTAAATCTGGCGGAAGGGGTCGTGGTGGAAGAGGAGCATCAGCACAAGCAGCTGGTGGGAGAGGTAGAGGGGGTGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAGGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGTTTAACTTTCGTAATCAGCGGAACACTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGGTTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATTTGTTATGTGATGAAGATATTGGGGGACGGAAGTCCGAAAAAGCTAAAGAGCTAGGAACAAAATTCCTCACAGAGGATGGGTTGTTTGATATGATTCGTGCATCAAAACCTTCAAAAGCTACCTCACAAGAAGAATGCAAGAAACCTCTGAATAAGGCTGTTGCAGTAGCACCCCAGACAAAAAGTGCCCCAAAAGCTGAAGCAAAGGTCTCTTTGTCTTCACGCTCACCTTCCAACCAATTCAAGCTGAAGACAGCAACTGCTACTCAGTATTCTTTGACGTGGACAGAGAAATATCGGCCTAGAGATCCAAAGGATATCATAGGGAATCAGTCACTTGTGTCTCAACTTCGAAATTGGTTAAAAGCTTGGCATGAGCAATTTTCGGTTTCTGGTAACAAAAAACATGGAAAAAAGCAAAGTGATTCGGGTGCCAAAAAAGCTGTTTTGTTAAGTGGAACCCCTGGTATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAGGCCATAGAGGTGAATGCTAGTGATAGCCGTGGAAAAGCTGATGGCAAAATTGAAAAAGGAATTAGTGGAAGCAATGCAAATACTATGAAGGAACTTGTAACCAATGAGGCTCTCGGCATTAATATGGATCGGTCAAAGCTTTCCAAAACTGTGCTTATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTCATTGCCAGCATCAAGATGTCAAAAGTTCCTATTATTTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTGCTTCTTAGTTTTCGGAAGCCTACAAAGCAACAGATGGCAAAGAGATTGATGGATGTTGCAAAGGCTGAAGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGCATGGCACTAAACCAGCTACACTATATGAGCCTCTCCATGTCAGTTATCAACTACGATGATATTAGGAAGCGCTTACTTAACAATGCGAAGGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGAAGGTTGAGAATGGATGAGAGAATTGATCTTAGCATGAGTGATCCTGATCTTGTCCCTCTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCTCGGCCGGTGAAGATGACAGTGGTATAAAACGCATGAACCTGATTGCCCGAGCTGCTGAGTCTATTGCTGATGGGGACATAGTGAACGTTCAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTTGCATCATGTATAATTCCTGCTGCATTATTGCATGGACAACGGGAAACACTTGAACAGGGAGAGCGGAATTTTAATCGGTTTGGTGGATGGCTGGGTAAGAACTCAACAATGGGTAAAAACATGAGGCTTTTGGATGATCTGCATGTTCACATTCTTGCATCTCGTGAATCTAGCTCTGGAAGGGATACTATTCGCTTGGAATACCTTACCCTTTTTCTTAAACAATTGGTAGAACCTCTTCGAGTCCTGCCTAAGGCTGAAGCTGTTCAGAAAGTTGTGGACTTTATGAATACTTACTCAATCAGTCAGGAAGACTTTGATACTATAATCGAGTTATCAAAATTCAAGGGTCATCCTAATCCGCTAGATGGCATACAGGCTGCTGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCAAATCTCGGATGGTTCGAGCTGCAGATCTAGTCACTCTTCCTGGAATAAAGAAGGCACCTAAGAAGCGAATTGCTGCTATTCTAGAACCAAATGATGAAGCAGAACAAGTTGATGGTGACACCTTGGATGAGAGTGAAGAAGAGAACACCTCTGACACAGAGGATTTGGGCACCACCACTGGTGAGAAGCTGCAGTCAGAACTTCAAAGTTTGAATTCAAAGGCCACGCAAGTACAATTGGAGTTGAAGGGAACGGAAAAATCGAGTTCCAATAAGACATCCGGTGGTAGAGGTAGAGGTAGAGGTGCTTCTGCATCTGCGCAGAAGGATGCTCCAGCTTCAAGAGCTGCTGCAAAAAGAAAGAGGTGA 2880 0.4399 MSDIRKWFMKSHEKANNAAAPKPSNPPKPSSAVKPDPDKTVPEGQGSSGRKITSKYFNKDKQKPKDEKETQELPAKRKNGKDCEELPESRPLKKIHKADEDEGDDDCVLVAGKKKVADSTPTKKLKSGSGRGVPKKSADLEEDDEDDGKEAATPAKSGGRGRGGRGASAQAAGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLVKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRASKPSKATSQEECKKPLNKAVAVAPQTKSAPKAEAKVSLSSRSPSNQFKLKTATATQYSLTWTEKYRPRDPKDIIGNQSLVSQLRNWLKAWHEQFSVSGNKKHGKKQSDSGAKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADGKIEKGISGSNANTMKELVTNEALGINMDRSKLSKTVLIMDEVDGMSAGDRGGVADLIASIKMSKVPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRKRLLNNAKDEDISPFTAVDKLFGFNAGRLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGEDDSGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVASCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNMRLLDDLHVHILASRESSSGRDTIRLEYLTLFLKQLVEPLRVLPKAEAVQKVVDFMNTYSISQEDFDTIIELSKFKGHPNPLDGIQAAVKSALTKAYKEQSKSRMVRAADLVTLPGIKKAPKKRIAAILEPNDEAEQVDGDTLDESEEENTSDTEDLGTTTGEKLQSELQSLNSKATQVQLELKGTEKSSSNKTSGGRGRGRGASASAQKDAPASRAAAKRKR* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1046 959 SMART AAA_5 395 533 IPR003593 -
Lja3g1046 959 PIRSF RFC1 1 932 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Lja3g1046 959 Coils Coil 898 925 - -
Lja3g1046 959 MobiDBLite consensus disorder prediction 870 890 - -
Lja3g1046 959 MobiDBLite consensus disorder prediction 54 121 - -
Lja3g1046 959 Pfam Replication factor RFC1 C terminal domain 672 834 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Lja3g1046 959 MobiDBLite consensus disorder prediction 189 204 - -
Lja3g1046 959 Gene3D - 604 714 - -
Lja3g1046 959 Gene3D BRCT domain 182 284 IPR036420 -
Lja3g1046 959 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 13 930 - -
Lja3g1046 959 Pfam BRCA1 C Terminus (BRCT) domain 207 282 IPR001357 -
Lja3g1046 959 SUPERFAMILY BRCT domain 205 286 IPR036420 -
Lja3g1046 959 PANTHER REPLICATION FACTOR C SUBUNIT 1 13 930 - -
Lja3g1046 959 SMART BRCT_7 207 285 IPR001357 -
Lja3g1046 959 Gene3D - 343 531 IPR027417 -
Lja3g1046 959 SUPERFAMILY post-AAA+ oligomerization domain-like 603 748 IPR008921 GO:0003677|GO:0006260
Lja3g1046 959 MobiDBLite consensus disorder prediction 891 934 - -
Lja3g1046 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 593 IPR027417 -
Lja3g1046 959 MobiDBLite consensus disorder prediction 865 959 - -
Lja3g1046 959 MobiDBLite consensus disorder prediction 1 206 - -
Lja3g1046 959 CDD BRCT_RFC1 205 283 - -
Lja3g1046 959 Gene3D - 532 602 - -
Lja3g1046 959 CDD AAA 392 532 - -
Lja3g1046 959 ProSiteProfiles BRCT domain profile. 205 286 IPR001357 -
Lja3g1046 959 CDD HLD_clamp_RFC 532 592 - -
Lja3g1046 959 Pfam ATPase family associated with various cellular activities (AAA) 399 511 IPR003959 GO:0005524|GO:0016887
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1046 1 913 Core DNA Replication Machinery Family AT5G22010 67.644 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1046 K10754 - gmx:100790070 1420.6