Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1043 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCACACAGCACTTTGCTAACCATAGTGACTGTTAGATGTGGTCATTGTTCCAATTTGCTATCAGTTAACTTGGGAGCATTTCAAGCATTTCCTCCTCAAGACCCTCAGCCACAGAAACAGCACCTGAGCTTTGAAGAACCAAGCAACAAAGATCTGGGATCATCTTCAAAATGTCACAAAACAGCAGCATTTGAACCAGTGGAGCGAGAACAACCTAGGATTCCTCCCATTCGTCCTGCAGAGAAGAGACACCGTGTTCCTTCTGCTTATAACCGGTTCATCAAGGAGGAAATTCAAAGGATTAAGGCTACTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAATTGGGCACATTTCCCTCACATTCACTTTGCAAAGCAAGCAAAGTTGGATCACCAAGGGGAAGGAACTGAAAAGACTATGAATGGATTCTACTGA 534 0.4438 MSMDMMATERVCYVHCNFCNTILAVSVPHSTLLTIVTVRCGHCSNLLSVNLGAFQAFPPQDPQPQKQHLSFEEPSNKDLGSSSKCHKTAAFEPVEREQPRIPPIRPAEKRHRVPSAYNRFIKEEIQRIKATNPDISHREAFSSAAKNWAHFPHIHFAKQAKLDHQGEGTEKTMNGFY* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1043 177 SUPERFAMILY HMG-box 104 153 IPR036910 -
Lja3g1043 177 Gene3D High mobility group box domain 103 167 IPR036910 -
Lja3g1043 177 Pfam YABBY protein 7 157 IPR006780 GO:0007275
Lja3g1043 177 MobiDBLite consensus disorder prediction 60 83 - -
Lja3g1043 177 MobiDBLite consensus disorder prediction 58 99 - -
Lja3g1043 177 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 177 - -
Lja3g1043 177 PANTHER PROTEIN YABBY 6-RELATED 1 177 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1043 Lja-Chr3 10819257 10824771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1043 1 177 C2C2-YABBY Transcription Factor Family AT1G08465 58.289 1.15e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lja3g1043 YABBY 5e-67 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1043 K25796 - gmx:100500091 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3520 3 69878614 69888548 Lja3g1043 3 10819257 10824771 PCT