Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1040 ATGTTTGGCAGAGCGCCGCCGAAGAAGAGTGACAGCACCAGGTACTACGACATCTTGGGTGTCTCCAAGACCGCTTCTCAAGATGATTTGAAGAAAGCTTACAAGAAAGCCGCCATTAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGTTCAAGGAGTTGGCACAAGCTTATGAGGTTCTGAATGACCCTGAGAAGCGCGAGATATATGATAATTATGGTGAAGATGCACTTAAGGAAGGAATGGGTGGTGGAGGAGGTGGGGGTCATGACCCGTTTGACATATTCTCATCTTTCTTTGGTGGGAGTCCCTTTTCATCAGGTGGTGGTGGTAGTCGAGGGCGGAGGCAGAGACGTGGAGAAGATGTTGTTTACCCTCTTAAGGTCTCTCTGGAGGACCTTTACCTCGGGGCAGCTAAGAAGCTTTCCCTCTCGAGAAATGTCTTATGCTCCAAGTGCAATGGCAAAGGTTCCAAGTCCGGGGCCTCCCTGAAGTGTCCTGGTTGTCAAGGATCTGGCATGAAGGTTTCTATAAGACACATAGGTCCATCAATGATTCAGCAAATGCAGCATCCTTGCAATGAATGTAAGGGTACTGGAGAAACTATAAATGATAGGGACCGCTGCCCACAGTGCAAGGGTGATAAGGTTTCCCAAGAGAAGAAAGTACTTGAAGTTTTCGTGGAGAAGGGAATGCAGAACCAGCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCACCAGATACAACTACTGGGGATATCGTGTTTGTGCTTCAATTGAAGGAACACCCCAAATTCAAAAGAAAGGCTGAAGACCTCTTTGTGGAGCACACCCTGTCCCTCACTGAGGCTTTATGTGGCTTCCAATTTGTGCTCACTCACTTGGATGGTCGGCAGCTCCTGATCAAATCAAACCCTGGGGAAGTTGTAAAGCCTGATTCATTTAAGGCCATCAATGATGAGGGAATGCCGATGTACCAGAGGCCATTTATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAATTCCCTGATTCTCTAAATCCTAATCAGGTTAAGGATTTGGAGGCTGCTCTGCCAGCTAAACCTTCATCACAATTGACTGACATGGAGCTTGACGAGTGTGAGGAGACTACACTCCATGATGTCAATATGGAAGAGGAGAATAGGAGGAAAGAGCAGCAAGCTCAGCAGGAGGCATATGATGAGGATGATGATATGCCTGGTGGTGCACAGAGGGTACAATGCGCCCAGCAGTGA 1266 0.4747 MFGRAPPKKSDSTRYYDILGVSKTASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLNDPEKREIYDNYGEDALKEGMGGGGGGGHDPFDIFSSFFGGSPFSSGGGGSRGRRQRRGEDVVYPLKVSLEDLYLGAAKKLSLSRNVLCSKCNGKGSKSGASLKCPGCQGSGMKVSIRHIGPSMIQQMQHPCNECKGTGETINDRDRCPQCKGDKVSQEKKVLEVFVEKGMQNQQKITFPGEADEAPDTTTGDIVFVLQLKEHPKFKRKAEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSFKAINDEGMPMYQRPFMKGKLYIHFTVEFPDSLNPNQVKDLEAALPAKPSSQLTDMELDECEETTLHDVNMEEENRRKEQQAQQEAYDEDDDMPGGAQRVQCAQQ* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1040 421 PRINTS DnaJ domain signature 16 34 IPR001623 -
Lja3g1040 421 PRINTS DnaJ domain signature 47 67 IPR001623 -
Lja3g1040 421 PRINTS DnaJ domain signature 67 86 IPR001623 -
Lja3g1040 421 SUPERFAMILY HSP40/DnaJ peptide-binding domain 117 275 IPR008971 GO:0006457|GO:0051082
Lja3g1040 421 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
Lja3g1040 421 Coils Coil 386 406 - -
Lja3g1040 421 Pfam DnaJ central domain 151 217 IPR001305 GO:0031072|GO:0051082
Lja3g1040 421 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 7 421 - -
Lja3g1040 421 MobiDBLite consensus disorder prediction 380 400 - -
Lja3g1040 421 SMART dnaj_3 13 67 IPR001623 -
Lja3g1040 421 ProSiteProfiles Zinc finger CR-type profile. 138 222 IPR001305 GO:0031072|GO:0051082
Lja3g1040 421 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Lja3g1040 421 CDD DnaJ_zf 151 217 IPR001305 GO:0031072|GO:0051082
Lja3g1040 421 Pfam DnaJ domain 15 72 IPR001623 -
Lja3g1040 421 Pfam DnaJ C terminal domain 125 346 IPR002939 -
Lja3g1040 421 Gene3D - 113 265 - -
Lja3g1040 421 Gene3D - 266 347 - -
Lja3g1040 421 SUPERFAMILY Chaperone J-domain 10 112 IPR036869 -
Lja3g1040 421 CDD DnaJ 15 64 IPR001623 -
Lja3g1040 421 MobiDBLite consensus disorder prediction 380 421 - -
Lja3g1040 421 CDD DnaJ_C 122 349 - -
Lja3g1040 421 Gene3D - 151 217 - -
Lja3g1040 421 Gene3D DnaJ domain 11 112 IPR036869 -
Lja3g1040 421 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 7 421 IPR044713 GO:0006457|GO:0030544
Lja3g1040 421 SUPERFAMILY HSP40/DnaJ peptide-binding domain 268 355 IPR008971 GO:0006457|GO:0051082
Lja3g1040 421 Hamap Chaperone protein DnaJ [dnaJ]. 11 372 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lja3g1040 421 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 148 219 IPR036410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1040 Lja-Chr3 10798702 10801411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1040 5 74 C2H2 Transcription Factor Family AT1G74250 37.975 2.96e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1040 3 10798702 10801411 Lja3g1040 3 10798702 10801411 ECH
Lja3g1040 3 10798702 10801411 Lja3g3525 3 69944337 69946968 ECH
Lja3g3525 3 69944337 69946968 Lja3g1040 3 10798702 10801411 PCT