Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1039 ATGGGTGTCCCGGGGAAGTGGATTAAAGCATTGGTTGGTCTAAAGAAATCAGAGAAGCCTGAATCTTCAGAGAAGAATGGAAATAAGGTTGGCAAGTCTCGGCATCGGAGAAAGCATTCCATCGAAATTGACAATAGTAAACTTCAGAAAGAGCTTGGTAGTGATGGTACTCTACCTATTGGAGATGCAGATCATGCAAATTCGCAATCAAACCTTGATGCCCATTATTTACCTTCCACCTCACAACAAACACAGGATGCAGCATATAATCATCAAGTCATGAGGGAGGAATGGGCTGCAACATACATTCAAACAGCATTTCGAGGATTTTTGGCCAGAAGAGCACTAAGAGCTTTGAAAGGATTGGTAAGGCTTCAAGCCCTTGTAAGAGGCCATGCAGTAAGAAAACAAGCTGCTATAACTCTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGGGCAAGACGTGTTCGCTTGGCCTTGGAAAGTGAAACTACACAACAAAAATTCCAGCAACAGCTTGTAAATGAGGCCCGTGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTATGGGATCTGTTGAACAAATTCAAACCAAAATATTAAAGAGACAGGAGGCTGCAGCCAAACGTGAGAGAGCTATGGCTTATGCTCTAGCTCATCAGTGGCAGGCTGGATCAAGGCAGCAGGCTGTTTCTTCAGGGTATGAACCTGATAAAAGTAGTTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTACGCCCTTGGGAGAATCGCTTTCTTGACACTAATATGAGGGATGGAGTAAATCTAGATGGAAGTGAAGCTATAGATGACAAAAATGAAATCAAACCTCAGTTAAGATCTGCTAACACGAAATCGATTCCACCAAGTATTCATCCAAACCTTGCTACTCAGATAACCGGTCCCTCTCATTCTGATGGTTGTGATTCTTCATCTAGTAAGTCAGTAGGTTTGCTAGAGCCATCAAACACACAGACTGTGAAACAAAAGTCTAATGTAAATGTTCAAAATCCCACTGAAGAAGCCAACACAAGATCTGAAGTTCCAAGATCTCAAAGTAATCCCAAGGAGAGAATCGCGCAAGTAGATAAACAGGCGAAGAATCGATTATCCCTGCCTAACAATGCAGGGGGAGGTCCTGGGGCTCAAACAGCCAAATATCCTTCTAGAAAAGGTACTAATGTGAAAGGGACACGTGGCGCGCAAAAACCTGTAAGGGATAAACCTAAGCTCAAAGGAGATGGGGATGTGAATGTTACTAAATCTGTTCCTCAGCCCACGGTTATGTAG 1326 0.4367 MGVPGKWIKALVGLKKSEKPESSEKNGNKVGKSRHRRKHSIEIDNSKLQKELGSDGTLPIGDADHANSQSNLDAHYLPSTSQQTQDAAYNHQVMREEWAATYIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESETTQQKFQQQLVNEARVREIEEGWCDSMGSVEQIQTKILKRQEAAAKRERAMAYALAHQWQAGSRQQAVSSGYEPDKSSWGWNWLERWMAVRPWENRFLDTNMRDGVNLDGSEAIDDKNEIKPQLRSANTKSIPPSIHPNLATQITGPSHSDGCDSSSSKSVGLLEPSNTQTVKQKSNVNVQNPTEEANTRSEVPRSQSNPKERIAQVDKQAKNRLSLPNNAGGGPGAQTAKYPSRKGTNVKGTRGAQKPVRDKPKLKGDGDVNVTKSVPQPTVM* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1039 441 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
Lja3g1039 441 PANTHER IQ-DOMAIN 5-RELATED 2 394 - -
Lja3g1039 441 SMART iq_5 118 139 IPR000048 GO:0005515
Lja3g1039 441 SMART iq_5 95 117 IPR000048 GO:0005515
Lja3g1039 441 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Lja3g1039 441 MobiDBLite consensus disorder prediction 276 441 - -
Lja3g1039 441 MobiDBLite consensus disorder prediction 276 290 - -
Lja3g1039 441 MobiDBLite consensus disorder prediction 12 44 - -
Lja3g1039 441 MobiDBLite consensus disorder prediction 12 29 - -
Lja3g1039 441 MobiDBLite consensus disorder prediction 413 427 - -
Lja3g1039 441 MobiDBLite consensus disorder prediction 291 371 - -
Lja3g1039 441 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Lja3g1039 441 Gene3D - 97 138 - -
Lja3g1039 441 PANTHER IQ-DOMAIN 5-RELATED 2 394 - -
Lja3g1039 441 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1039 Lja-Chr3 10787464 10795620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1039 1 420 IQD Protein Family AT3G22190 56.338 4.96e-116 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1039 - - lang:109325503 521.931