Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1033 ATGGATGAAAACGATGTTCCTCCCCTTTTTCTCTGCCCCATTTCCCTGCAGCTCATGAGAGATCCTGTCACTGTTTGCACAGGAATCACTTACGATAGAGAAAACATAGAGAAATGGTTATCTTCATGCAAGAACTACACTTGCCCTGTCACAAAGCAACCACTTTCACAACACACAGATCTCACTCCAAACCACACTCTACAAAGGTTGATCCAAGCTTGGTGTTCCCACAGTGCTTGTCTTGGAATTGAAAATGTTCCAACTCCAAAACCAACCATTGACAAAACTCAAATTCTCAAACTCATCTCAGAAGCAAAGAGGTTCCCGGAAAAGCAACTCAAATGCCTCAAAAGCCTTCAATCTATTGCTCTTGAAAGTGAAAGTAACAAACTCTGTTTGGTGTCTTCAGGGGTAATACTAATAGATTTCTTGGCTTCAATCATGTTGAGTTGCATCAGCCAAGAAGATTCACCTCTTAAGAGTGAAGTTGCTATTGAAGTCTTGTTTCATCTTAATCCATGTGGGGCTCAGCTTAAGAATCTGATAAACAATGAGGGTACTATTCAATTGATTGAAGCTTTGTTTCAGGTTTTGAGGCATGGAAATTACAAGTCTAGGTCATATGCAACTATGTTATTAAAGTCAGCATTTGAAGTGGCTGGACCAACCCAATCAAGCAGTGTCAGAACAGAATTGTTTGTGGAAATAACAAGATTTCTAAAGGATCAGGTTTCAAATCAGGGATCTAAGGCAGCATTGAAGCTTCTTGTGGAGTTGTGTTCATGGGGTAGGAACAGAATCAAAGCAGTAGAAGGTGGTTCTGTTTTAGTCCTCATTGAGCTTCTTTTTGAGGTCTCTGAAAGAAGATCATGTGAACTCATGTTGGCAGCTTTGGATAAACTCTGTGACTGTGCAGAAGGAAGGGCTGAATTCTTGAGCCATGGAGCTGGATTGGCCATTGTGTCAAAGAAAATTTTGTGGGTTTCTCATGTGGCAAGTGATAGAGGGGTTAGAATTTTGAGCTCAATTTGTAGGTATTCAGCTACTACTAAGGTACTTCAAGAAATGCTGCAATTTGGGGTGGTGTCAAAGTTGTGTTTGGTGGTTCAGGTGGAAAGCAGTTTCAAGGCCATGGAGACACTCAAATTGCACTCTGGAGTTTGGAAGAATTCCCCATGTATACCTCTCCCTTTGCTTTCATTCCACCCATGA 1212 0.4125 MDENDVPPLFLCPISLQLMRDPVTVCTGITYDRENIEKWLSSCKNYTCPVTKQPLSQHTDLTPNHTLQRLIQAWCSHSACLGIENVPTPKPTIDKTQILKLISEAKRFPEKQLKCLKSLQSIALESESNKLCLVSSGVILIDFLASIMLSCISQEDSPLKSEVAIEVLFHLNPCGAQLKNLINNEGTIQLIEALFQVLRHGNYKSRSYATMLLKSAFEVAGPTQSSSVRTELFVEITRFLKDQVSNQGSKAALKLLVELCSWGRNRIKAVEGGSVLVLIELLFEVSERRSCELMLAALDKLCDCAEGRAEFLSHGAGLAIVSKKILWVSHVASDRGVRILSSICRYSATTKVLQEMLQFGVVSKLCLVVQVESSFKAMETLKLHSGVWKNSPCIPLPLLSFHP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1033 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Lja3g1033 403 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lja3g1033 403 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Lja3g1033 403 PANTHER OS11G0573500 PROTEIN 2 401 - -
Lja3g1033 403 Gene3D - 85 388 IPR011989 -
Lja3g1033 403 PANTHER WDSAM1 PROTEIN 2 401 IPR045185 GO:0061630
Lja3g1033 403 SUPERFAMILY ARM repeat 191 370 IPR016024 -
Lja3g1033 403 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Lja3g1033 403 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lja3g1033 403 SUPERFAMILY RING/U-box 4 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1033 Lja-Chr3 10685517 10686728 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1033 1 403 U-box Gene Family AT2G35930 50.852 5.00e-136 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1033 - - gmx:100778012 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1033 3 10685517 10686728 Lja3g1033 3 10685517 10686728 ECH
Lja3g3535 3 70122107 70123515 Lja3g1033 3 10685517 10686728 PCT