LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g1033	ATGGATGAAAACGATGTTCCTCCCCTTTTTCTCTGCCCCATTTCCCTGCAGCTCATGAGAGATCCTGTCACTGTTTGCACAGGAATCACTTACGATAGAGAAAACATAGAGAAATGGTTATCTTCATGCAAGAACTACACTTGCCCTGTCACAAAGCAACCACTTTCACAACACACAGATCTCACTCCAAACCACACTCTACAAAGGTTGATCCAAGCTTGGTGTTCCCACAGTGCTTGTCTTGGAATTGAAAATGTTCCAACTCCAAAACCAACCATTGACAAAACTCAAATTCTCAAACTCATCTCAGAAGCAAAGAGGTTCCCGGAAAAGCAACTCAAATGCCTCAAAAGCCTTCAATCTATTGCTCTTGAAAGTGAAAGTAACAAACTCTGTTTGGTGTCTTCAGGGGTAATACTAATAGATTTCTTGGCTTCAATCATGTTGAGTTGCATCAGCCAAGAAGATTCACCTCTTAAGAGTGAAGTTGCTATTGAAGTCTTGTTTCATCTTAATCCATGTGGGGCTCAGCTTAAGAATCTGATAAACAATGAGGGTACTATTCAATTGATTGAAGCTTTGTTTCAGGTTTTGAGGCATGGAAATTACAAGTCTAGGTCATATGCAACTATGTTATTAAAGTCAGCATTTGAAGTGGCTGGACCAACCCAATCAAGCAGTGTCAGAACAGAATTGTTTGTGGAAATAACAAGATTTCTAAAGGATCAGGTTTCAAATCAGGGATCTAAGGCAGCATTGAAGCTTCTTGTGGAGTTGTGTTCATGGGGTAGGAACAGAATCAAAGCAGTAGAAGGTGGTTCTGTTTTAGTCCTCATTGAGCTTCTTTTTGAGGTCTCTGAAAGAAGATCATGTGAACTCATGTTGGCAGCTTTGGATAAACTCTGTGACTGTGCAGAAGGAAGGGCTGAATTCTTGAGCCATGGAGCTGGATTGGCCATTGTGTCAAAGAAAATTTTGTGGGTTTCTCATGTGGCAAGTGATAGAGGGGTTAGAATTTTGAGCTCAATTTGTAGGTATTCAGCTACTACTAAGGTACTTCAAGAAATGCTGCAATTTGGGGTGGTGTCAAAGTTGTGTTTGGTGGTTCAGGTGGAAAGCAGTTTCAAGGCCATGGAGACACTCAAATTGCACTCTGGAGTTTGGAAGAATTCCCCATGTATACCTCTCCCTTTGCTTTCATTCCACCCATGA	1212	0.4125	MDENDVPPLFLCPISLQLMRDPVTVCTGITYDRENIEKWLSSCKNYTCPVTKQPLSQHTDLTPNHTLQRLIQAWCSHSACLGIENVPTPKPTIDKTQILKLISEAKRFPEKQLKCLKSLQSIALESESNKLCLVSSGVILIDFLASIMLSCISQEDSPLKSEVAIEVLFHLNPCGAQLKNLINNEGTIQLIEALFQVLRHGNYKSRSYATMLLKSAFEVAGPTQSSSVRTELFVEITRFLKDQVSNQGSKAALKLLVELCSWGRNRIKAVEGGSVLVLIELLFEVSERRSCELMLAALDKLCDCAEGRAEFLSHGAGLAIVSKKILWVSHVASDRGVRILSSICRYSATTKVLQEMLQFGVVSKLCLVVQVESSFKAMETLKLHSGVWKNSPCIPLPLLSFHP*	404

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja3g1033	403	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	81	IPR013083	-
Lja3g1033	403	SMART	Ubox_2	9	74	IPR003613	GO:0004842\|GO:0016567
Lja3g1033	403	Pfam	U-box domain	6	76	IPR003613	GO:0004842\|GO:0016567
Lja3g1033	403	PANTHER	OS11G0573500 PROTEIN	2	401	-	-
Lja3g1033	403	Gene3D	-	85	388	IPR011989	-
Lja3g1033	403	PANTHER	WDSAM1 PROTEIN	2	401	IPR045185	GO:0061630
Lja3g1033	403	SUPERFAMILY	ARM repeat	191	370	IPR016024	-
Lja3g1033	403	ProSiteProfiles	U-box domain profile.	5	81	IPR003613	GO:0004842\|GO:0016567
Lja3g1033	403	CDD	RING-Ubox_PUB	10	53	IPR045210	-
Lja3g1033	403	SUPERFAMILY	RING/U-box	4	77	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g1033	Lja-Chr3	10685517	10686728	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g1033	1	403	U-box Gene Family	AT2G35930	50.852	5.00e-136	394

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g1033	-		-	gmx:100778012	545.043

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g1033	3	10685517	10686728	Lja3g1033	3	10685517	10686728	ECH
	Lja3g3535	3	70122107	70123515	Lja3g1033	3	10685517	10686728	PCT

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