Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1032 ATGACAGAAATTGAAATTCCTCAATATTATGTATGTCCAATTTCGTTTCAGCTCATGAAGGATCCTGTGACAGCCGTTACCGGCATAACATACGACAGAGAAAGCATCGAGCAATGGTTGCAGAAAGCCAGAGATTGCGTGTGCCCAGTTACCAAACAACCACTTCCTAGAAGCTCACAATATTTGACTCCAAATCACACGCTAAGAAGGTTGATTCAAGCATGGTGTTCATCAAATTCAACCAACGGTGTAGATCAAATTCCAACCCCAAAAACTCCTATTGAGAAGTCCCACATTGAGAAACTTGTGAAGGATCTTGAGGTCCCTCGGTTATATAAAGCAGCACTAGAGAAATTGCGTGAGTTTGCTACAGAAAGTGAGAGAAACAGAACAAGCATGGCTGAAACAGGAGTAGTGAAAGGTGTGGTGAAGTTGATAAACAAGAATTTCAAGGAAGGAAGGAGAACAATTTTCCTAGAAGAAGCTTTGAGAATTGTTCATCTTCTATGGAATGTTCCAACCATGTCTTACAGCATGAAGAATTTGGTTGGAACAAACATGGACTTCATCAATTCCTTGACTTGGATTGTGCTGCTTCACATGGAGAAAAACGTGAAGATGGTCAACGAAGCAATGCCCCTTTTGAAATTGACAATTGAAGTCGCAAATTCAACTCTGGTAGCGAATTTAGACTCTGGATTCTTCACAGGAATGGTGAATGTGTTGAGAAAAAGAGCACTCTCTCAACAAGCTATCAAATCAGCTTTACACATCCTCGTCCAAACGTGCCCTTTGGGTAGAAACAGAACAAGGATCGTGGAAGCAGGGGCAGTGACAGAGCTCATTGAGCTCGAGCTTGAAAAGCCAGAGAAGAACATCTCAGAGCTCATATTCAACCTTCTTGCACATCTATGTTCTTGTGCTGATGGAAGGGAACATTTTCTTCGCCACGCGGCGGGCATCGCGGTGGTTTCGAAGAGGATTCTGAGGGTTTCTCCTGGAACTGATGACAGAGCAGTACATATACTTGGAATCATTGCGAGATACTCGCAATCCAAAGAGTTTGTTCAAGAGATGTTGAGAGTTGGAGCAGTGTCGAAGCTTTGCATGGTGATGCAAGCGGATTGTGCTTCTTATTTGAAAGAAAAAGCAAGAGATATTCTTAGGTTGCACTCGACAGCTTGGAATAATTCTCCTTGTATACAATTGTATTTGTTTACTAGGCACCAAAGGTGA 1236 0.4231 MTEIEIPQYYVCPISFQLMKDPVTAVTGITYDRESIEQWLQKARDCVCPVTKQPLPRSSQYLTPNHTLRRLIQAWCSSNSTNGVDQIPTPKTPIEKSHIEKLVKDLEVPRLYKAALEKLREFATESERNRTSMAETGVVKGVVKLINKNFKEGRRTIFLEEALRIVHLLWNVPTMSYSMKNLVGTNMDFINSLTWIVLLHMEKNVKMVNEAMPLLKLTIEVANSTLVANLDSGFFTGMVNVLRKRALSQQAIKSALHILVQTCPLGRNRTRIVEAGAVTELIELELEKPEKNISELIFNLLAHLCSCADGREHFLRHAAGIAVVSKRILRVSPGTDDRAVHILGIIARYSQSKEFVQEMLRVGAVSKLCMVMQADCASYLKEKARDILRLHSTAWNNSPCIQLYLFTRHQR* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1032 411 PANTHER WDSAM1 PROTEIN 1 409 IPR045185 GO:0061630
Lja3g1032 411 SUPERFAMILY ARM repeat 109 389 IPR016024 -
Lja3g1032 411 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Lja3g1032 411 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Lja3g1032 411 Gene3D - 104 394 IPR011989 -
Lja3g1032 411 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 409 - -
Lja3g1032 411 SUPERFAMILY RING/U-box 3 83 - -
Lja3g1032 411 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Lja3g1032 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1032 Lja-Chr3 10674788 10676023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1032 3 401 U-box Gene Family AT2G35930 42.079 7.38e-100 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1032 - - gmx:100787426 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1032 3 10674788 10676023 Lja3g1032 3 10674788 10676023 ECH