Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1030 ATGGCAACGTACTTTCATGGAAATACATCATCAGAAATCGAATCCTCAGCAGAAGGGTTGCAGACACTTTACCTTATGAACCCAAACTACGTACCTTACTCTGACGCGCCCAACATGCTCCTCGTTAATCCCAATACTAGTATTGCTGCTGCTGGTACTTCCGCCAACGCGCTCAACCTCTCCAACTTCTCCCACGCGCCTCCACCTTCTTCAGCAAATAATCACCACCATCATCAACAACAACAACAAAACCACCTAGTTGGGTTTACCATTCCTTCCTCAAACATCCTTGGATCCACCACCACTAACACCACTACTGGCAACTCAAACCATCTCGGACAGCACGGGATCTCCGGCGGCTTCCAGAGCTTTGCAGCCACCACCACACCAGCAGTGGTGGCTACAAACCCACGTGCTCACTATAACTTGTGGGGTTCGATAATCAATCAAACCATGTCATCTGTGACAACTGCGGCAGAAACCACTCCGAGCAACAATTCAGCGTACTCTGCTGCAGTCACCGTGGCAGATGACTCTGGTTATAATAATCGTGGTAATCAGCAGAGTGGCCTGTCGCTTAGTCTTTCATCGCAACAACCATCTTTTAGGTCACTCTCCGGTGGTGAGATTGGCGTTCCGGTGAGCCGTAGCGCTGGCAATGGAGTTATTTTGGGATCCAAGTATTTGAAAGCCGTACAGGAGGTTCTAGATGAAGCTGTGAAAGTGGGGAAGGAAATTTGTGAAGGGGAATCTATGGAGGGGGCGCCTAAGAATAATAAAGAGAAGATGAGAGCGAATATTGAATCTGAAACTTCTGGGATCGGTGAAAACAGTGGAAGTAACAAGCAAGGAGCTGAGCTAAGCATGGCACAGAGACAAGAGCTTCAGATGAAGAAGTCCAAGCTCCTGAGCATGCTCGATGAGGTAGAGCTAAGGTACCGACAATATCACAACCAAATGGACATGGTGATATCATCATTTGAGCAAGGAACGGGGTATGGGGCGGCAAAATCATATACAACCCTCGCCTTGAAGACCATTTCAAAGCAATTTCGATGTCTGAAAGATGCAATATCTTCACAGATTAAGACAGCGAGCAAGACATTGGGTGATCAAGATGATTGCTTAGGAGCCAAGGTTGAAGGTTCCAGGCTTAGGTATGTTGACCACCATCTTCGGCAGCAACGGGCGTTGCAGCAGCTCGGAATGATCCAGCACAATGCTTGGAGGCCCCAACGAGGCTTGCCTGAACGAGCTGTTTCCGTTCTTCGTGCTTGGCTTTTTGAGCATTTCTTGCACCCCTATCCTAAGGATTCCGATAAGGTTATGCTTGCAAAACAAACTGGACTTACTCGGAGCCAGGTGTCTAACTGGTTTATAAATGCCCGAGTTCGGCTGTGGAAACCAATGGTTGAAGAAATGTATTTGGAAGAAATCAAGGAGCAAGAGCAGAATAATGATAACACAAATAGATCAGCAAAAGATCAATCAAGCAAGGAGTTATGGTCAGCATCAGCAACTAATGCTACACATGAATCATCATCAGGTGCCTTAAAACTTGATCAACAGATTAATTCCTTTCATTCAAAACCAGAAAGATTAATCAACAACCAAAACACCTCTCCAACTGAGATCTCAAATTCTGATAACAATTCACTGTCAACATCTCCCATGGGAGGAGGATCATTTCAATCCCAGTACTCTGGCTTCCATCTTGCAGAGTCATCATCTGAAATCCAAATTAGGAGTAGTCCAAAAAAACCAAGAAGTTCTGAAATGCAACAACACTTTCCAGGTTCAATGAACATGGAAATGAAACCTGGAGGAGAGGAAACTAGAGAAGCTAACACAGAGTTTGACACTGAAAGGCACAACAAAGATGGCTACCCTTTGAAGACTAGTGGTGACGAAAACCATGGTGGGGGTTATGGAGGAGCATTTTCCATGGAAGACATTGGAAGGTTTAATGTCACTGACCAATTGGCTCCAAGGTTCCATGGAAATGGTGTTTCACTCACTCTTGGACTTCCCCATAATGACAACCTTTCTCTCTCTGCAACACAGCATGGGTTTCTCCCACAGAATATGCATTTGGGAGGGAGGCTTGAAATGGAAACCAATGAAAATGAGTTTTGTGGCATCAATAACACTACTGCTCCACCTTCTTCTCATTCAGGCACCAGTTATGAGAACATTGATATTCAAAACAGAAAGAGATTTGCAGCACAATTATTGAGGAATTTTGTGGCTTAA 2253 0.451 MATYFHGNTSSEIESSAEGLQTLYLMNPNYVPYSDAPNMLLVNPNTSIAAAGTSANALNLSNFSHAPPPSSANNHHHHQQQQQNHLVGFTIPSSNILGSTTTNTTTGNSNHLGQHGISGGFQSFAATTTPAVVATNPRAHYNLWGSIINQTMSSVTTAAETTPSNNSAYSAAVTVADDSGYNNRGNQQSGLSLSLSSQQPSFRSLSGGEIGVPVSRSAGNGVILGSKYLKAVQEVLDEAVKVGKEICEGESMEGAPKNNKEKMRANIESETSGIGENSGSNKQGAELSMAQRQELQMKKSKLLSMLDEVELRYRQYHNQMDMVISSFEQGTGYGAAKSYTTLALKTISKQFRCLKDAISSQIKTASKTLGDQDDCLGAKVEGSRLRYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNNDNTNRSAKDQSSKELWSASATNATHESSSGALKLDQQINSFHSKPERLINNQNTSPTEISNSDNNSLSTSPMGGGSFQSQYSGFHLAESSSEIQIRSSPKKPRSSEMQQHFPGSMNMEMKPGGEETREANTEFDTERHNKDGYPLKTSGDENHGGGYGGAFSMEDIGRFNVTDQLAPRFHGNGVSLTLGLPHNDNLSLSATQHGFLPQNMHLGGRLEMETNENEFCGINNTTAPPSSHSGTSYENIDIQNRKRFAAQLLRNFVA* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1030 750 Gene3D - 412 492 - -
Lja3g1030 750 MobiDBLite consensus disorder prediction 607 633 - -
Lja3g1030 750 CDD homeodomain 409 470 IPR001356 GO:0003677
Lja3g1030 750 Pfam Homeobox KN domain 426 465 IPR008422 GO:0003677|GO:0006355
Lja3g1030 750 MobiDBLite consensus disorder prediction 530 598 - -
Lja3g1030 750 MobiDBLite consensus disorder prediction 60 84 - -
Lja3g1030 750 Coils Coil 472 499 - -
Lja3g1030 750 SUPERFAMILY Homeodomain-like 410 475 IPR009057 -
Lja3g1030 750 Pfam Associated with HOX 222 359 IPR006563 -
Lja3g1030 750 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 697 - -
Lja3g1030 750 SMART prehox3 217 360 IPR006563 -
Lja3g1030 750 MobiDBLite consensus disorder prediction 489 518 - -
Lja3g1030 750 SMART HOX_1 409 473 IPR001356 GO:0003677
Lja3g1030 750 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 8 697 - -
Lja3g1030 750 MobiDBLite consensus disorder prediction 530 639 - -
Lja3g1030 750 ProSiteProfiles 'Homeobox' domain profile. 406 469 IPR001356 GO:0003677
Lja3g1030 750 Coils Coil 292 312 - -
Lja3g1030 750 MobiDBLite consensus disorder prediction 481 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1030 Lja-Chr3 10658260 10664462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1030 1 750 Homeobox Transcription Factor Family AT2G35940 41.625 5.12e-128 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja3g1030 POX 8.8e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1030 - - gmx:100786883 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1030 3 10658260 10664462 Lja3g1030 3 10658260 10664462 ECH
Lja3g3536 3 70132295 70137694 Lja3g1030 3 10658260 10664462 PCT