Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1027 ATGGTGGGTGTTTTGGTGGAAATTTGCATCTTTCTCTTGTTTTCCATCATGATTGCAATGTGTGGTGGTGATACTAACCCAAATGATCTCAAAATTCTGAATGATTTCAGAAAAGGGTTGAAGAATCCAGAGCTTCTCAAATGGCCAGAGAATGGAGATGACCCTTGTGGCCCTCCTTCATGGCCTTATGTGTTCTGTTCTGGAGGCAGAGTCACTCAGATTCAGGCTAAGAATTTGGGTCTTCAAGGATCATTGCCTCCAAATTTTAATCAGCTATCAGAGCTCCAAAATTTGGGGCTTCAAAGGAACAACCTTAGTGGGATGCTACCTAGTTTCAGTGGATTATCAAATTTGCAATTTGCTTTCTTGGATTACAATGAGTTTGATGCAATCCCACTTGATTTCTTCAATGGACTCACCAGCATCACGGTCTTGTCTTTGGAAGAAAACCCATTGAATGCTACTACTGGGTGGTCATTTCCTAAGGACTTAGAGAATTCAGGGCAATTAACCAACCTTTCTCTGGTGAATTGTAATCTGGTTGGAGAACTACCTGATTTTCTGGGCACATTGCCTTATCTCACAAATTTAAGGCTTTCATTCAACAAATTGTCTGGTGGCATTCCAGCTAGTTTTAATCAATCTTCAATCCAGGTTTTGTGGTTGAATGGTCAAGAAGGTGGTGGCATGACAGGTCCTATTGATGTTATTGCTTCCATGACCTCCCTGAGACAAGCTTGGCTACATGGAAACCAGTTCACTGGGACAATTCCAGAAAACATTGGAAGTTTAACTTCCTTGCAGGAGCTGAACCTGAATAGCAATCAGCTTGTTGGCTTGATTCCTAATACCTTGGCAAATCTGGACCTTAAGATACTAGATTTAAGTAATAACAGGTTCATGGGTCCAATCCTAAAGTTTAAGGCTGCCAAAGTATCTGATGATTCCAATGTCTTTTGTCAATCTGAGCCTGGGCTTGAATGTGCCCCTCAAGTTACTGCTTTACTGGATTTTCTCCATGATCTGAATTACCCTTCAGTTCTGAGTTCTAAATGGTCTGGTAATGAACCATGTGGAGAGCCATGGTTTGGATTGAGCTGCAACCCCAAATCAGAGGTAATTATAATCAATTTGCCAAGACAAAAGCTCAATGGAACACTGAGTCCTTCACTTGCTAAGTTAGATTCACTCCATGATATCAGGCTTGCTGGAAACAATATAGTTGGCAAAGTTCCTAGCAATTTTACTGAACTTAAGTCTTTAAAGTTGTTGGATTTAGCTGATAACAATGTTGAACCTCCATTGCCAAAGTTTCGTGATGATGTGAAGGTTATCATTGATGGTAACCCCCTTTTTGCTAAGCTGAGTCCCAAGCCTACTATTAGCCCACCACCTTTAAGTGCATCACCTACAAGTGCACCACCTACAAGTGCACTACCACCTTCACTGGCACTGCCACCACCGGCACCATCACCTTCCCATATGCCAACTTCTTCTGGTCTGATCCCAAGCCCAAATCACTCTATCTCTGTCCCATTAAAGCCCCGATCAAATATCTTGCAAAGATCCAAGACAGTAGTGATAGTTGCTGGAGTTGCAATCTTTGGATTTGTAGCTCTTTTGGTAATTCCTATCATCATGTGTTGCTTGAAGAAGCATAAGTCATCAATGGATGCTCCCAGCTCTGTTGTTGTTCTCACTAAAGATTCATCTGATCCAGAAAAGATGGTTAACTATGCTGTTTCAGATAGCACCGTTGGAAGTTTATCAACAAAGACAGGGATAAGTTCTCTGACTAACATAAGCGGGGAAACTGAAAACTCTCATGTAGTTGAGGCTGGTAACCTTGTCATCTCTGTTCATGTTCTACGCAAGGTCACCAAGAATTTTGCTTCAGAAAACGAACTCGGCCGAGGCGGGTTCGGAACAGTTTACAAGGGTGAACTAGAAGATGGGGCCAAAATAGCAGTGAAGAGAATGGAGTGTGGAGCTATTAGCAGTAAAGCAGTGGACGAGTTTCAAGCTGAAATAGCTGTTCTTTCCAAGGTCCGCCACCGGCATTTGGTATCCCTGCTCGGCTATTCCATTGAAGGCAATGAAAGGCTTTTGGTTTATGAATATATGCCGCTGGGTGCTCTAAGCAGACATCTTTTTCAGTGGAAAAGCTTGAAGTTGGAGCCTTTATCTTGGTCACAGAGGCTTGCAATAGCACTTGATGTTGCTAGAGGGATGGAATACCTTCATGGTCTCGCCCGCGAGACCTTCATCCATCGAGACCTCAAGTCTTCGAATATTCTATTAGGGGATGATTTTCGCGCAAAAGTTTCTGATTTTGGTCTGGTGAAACTTGCCCCAGATGGTGAGAAGTCCGTGGCAACAAGGCTTGCTGGAACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGCAAAATCACCACTAAAGTTGATGTGTTCAGCTATGGTGTGGTGTTAATGGAACTTCTGACTGGACTAATGGCTCTTGACGAGAGCCGACCGGAGGAAAGTCAGTACTTGGCACAATGGTTTTGGCAAATCAAATCTAGCAAAGAAACGCTTATGCCTGCGATTGATCCAGCCCTTGAAGCGAGCGAAGAGACTTTCGAGAGTATTTCCATTGTAGCAGAGCTTGCTGGACATTGTACTGCGAGGGAAGCGAGCCATAGGCCGGATATGAGCCACGCCGTCAATGTGCTGGTAGCATTGGTAGAGAAATGGAGGCCAGTTGATGATGAATTTGATTATGGCTTTGGCATTGACTACAATCAACCACTTCCCCAGATGTTGAAACTTTGGAAGGAAGGAGAAAGCAAAGAATTGAGCCATGCAAGTCTTGAAGACAGTAAGGGGAGCATACCGGCTAAGCCTAATGGTTTTGCAGACTCCTTCACTGCTGCTGATGCTAGATGA 2931 0.4357 MVGVLVEICIFLLFSIMIAMCGGDTNPNDLKILNDFRKGLKNPELLKWPENGDDPCGPPSWPYVFCSGGRVTQIQAKNLGLQGSLPPNFNQLSELQNLGLQRNNLSGMLPSFSGLSNLQFAFLDYNEFDAIPLDFFNGLTSITVLSLEENPLNATTGWSFPKDLENSGQLTNLSLVNCNLVGELPDFLGTLPYLTNLRLSFNKLSGGIPASFNQSSIQVLWLNGQEGGGMTGPIDVIASMTSLRQAWLHGNQFTGTIPENIGSLTSLQELNLNSNQLVGLIPNTLANLDLKILDLSNNRFMGPILKFKAAKVSDDSNVFCQSEPGLECAPQVTALLDFLHDLNYPSVLSSKWSGNEPCGEPWFGLSCNPKSEVIIINLPRQKLNGTLSPSLAKLDSLHDIRLAGNNIVGKVPSNFTELKSLKLLDLADNNVEPPLPKFRDDVKVIIDGNPLFAKLSPKPTISPPPLSASPTSAPPTSALPPSLALPPPAPSPSHMPTSSGLIPSPNHSISVPLKPRSNILQRSKTVVIVAGVAIFGFVALLVIPIIMCCLKKHKSSMDAPSSVVVLTKDSSDPEKMVNYAVSDSTVGSLSTKTGISSLTNISGETENSHVVEAGNLVISVHVLRKVTKNFASENELGRGGFGTVYKGELEDGAKIAVKRMECGAISSKAVDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSRHLFQWKSLKLEPLSWSQRLAIALDVARGMEYLHGLARETFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVATRLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEESQYLAQWFWQIKSSKETLMPAIDPALEASEETFESISIVAELAGHCTAREASHRPDMSHAVNVLVALVEKWRPVDDEFDYGFGIDYNQPLPQMLKLWKEGESKELSHASLEDSKGSIPAKPNGFADSFTAADAR* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1027 976 SUPERFAMILY Protein kinase-like (PK-like) 606 914 IPR011009 -
Lja3g1027 976 SMART LRR_typ_2 92 114 IPR003591 -
Lja3g1027 976 SMART LRR_typ_2 264 287 IPR003591 -
Lja3g1027 976 SMART LRR_typ_2 115 138 IPR003591 -
Lja3g1027 976 Gene3D Phosphorylase Kinase; domain 1 592 707 - -
Lja3g1027 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672|GO:0006468
Lja3g1027 976 CDD STKc_IRAK 636 906 - -
Lja3g1027 976 MobiDBLite consensus disorder prediction 457 494 - -
Lja3g1027 976 PANTHER OSJNBA0070M12.3 PROTEIN 7 976 - -
Lja3g1027 976 Pfam Leucine rich repeat N-terminal domain 330 368 IPR013210 -
Lja3g1027 976 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Lja3g1027 976 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524
Lja3g1027 976 Gene3D Ribonuclease Inhibitor 330 455 IPR032675 -
Lja3g1027 976 MobiDBLite consensus disorder prediction 456 507 - -
Lja3g1027 976 SMART serkin_6 630 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1027 976 Pfam Protein tyrosine and serine/threonine kinase 633 904 IPR001245 GO:0004672|GO:0006468
Lja3g1027 976 PANTHER OSJNBA0070M12.3 PROTEIN 7 976 - -
Lja3g1027 976 MobiDBLite consensus disorder prediction 947 976 - -
Lja3g1027 976 SUPERFAMILY L domain-like 26 305 - -
Lja3g1027 976 SUPERFAMILY L domain-like 330 437 - -
Lja3g1027 976 Gene3D Transferase(Phosphotransferase) domain 1 708 921 - -
Lja3g1027 976 Gene3D Ribonuclease Inhibitor 27 325 IPR032675 -
Lja3g1027 976 ProSiteProfiles Protein kinase domain profile. 630 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1027 Lja-Chr3 10547115 10551382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1027 81 899 Receptor kinase-like Gene Family AT1G55610 30.182 1.50e-80 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lja3g1027 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1027 - - gmx:100815045 1468.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1027 3 10547115 10551382 Lja3g1027 3 10547115 10551382 ECH