Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1023 ATGGAGTCTAGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGTGGAGCTTTTGGAGCTGCTATTCTTGTTAATCATAAGGCTGAGAGGAAGAAATATGTGCTGAAAAAAATCAGGCTTGCCAGGCAGACTGAAAGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTAGAATCCAGCACCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGTATTGTCACTGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAACAAAATGGTGCTTACATTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTGGAATACCTGCATTCAAATTATGTTTTACATCGTGACCTAAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATATTCGCCTTGGGGATTTTGGGCTTGCTAAGACACTCAAAGCAGATGATTTGGCTTCCTCAGTGGTAGGAACTCCAAATTATATGTGTCCTGAACTGCTTGCAGATATTCCGTATGGATTCAAATCCGACATTTGGTCACTGGGGTGTTGTATATACGAGATGGCTGCTCATCGCCATGCTTTTAAAGCCTTTGATATGGCAGGATTGATAAGCAAGATAAACCGTTCCTCTATTGGTCCTTTGCCTCCTTGTTACTCCCCTGCATTGAAAATACTGATAAAGGGCATGCTGAGAAAAAGTCCTGAGCATCGTCCAACAGCATCTGAGGTGTTAAAGCACCCTTATTTGCAACCTTATGTTGATCAATATCGTCCATCTTTCAGTCCTCCAACATCATTTTCTCCTGAAAAACCAATTAATGTTACTGTTCGCCAAAAGAAGATGGCTGAAAGTCAAAACAGTAGTGGTTCAAGCAGTGACAAAGATAGTTTGATGTCAAATGATAGAAACATTGCAACAGCAATGCCAAAGTGTGATAACAAGGCCACAGAGATGGATATTCCCTCAATTGATGATGATGATGATGATGCTGATGGCTCAGAGCATCTCCCTCCCAGTGAGGAAGAAAATGGCTCTAGCAATGGCAATACGAAAACAACAGAACATGAGGTCATGAAACCATCTCATAATGAACAGTGTTCTAATGTTGAATCTAGACAGCAGCCAAAAACAATCAGAAATATCATGATGGCACTGAAGGAAGGAAAAGTTAGAGATGCAACTTCTCCAATGCGAGGAAGTCGTGTAAAGAGTGGTGGTGTATCAACACAGAAAATAAATCCAGAAACATTGTCTAACTCTAAACTGCCTAAACCAACTTTTATTGCTCCTAGTTTGAAGGCTAATTTAGAGTCACCAAATGTTGCACTTGCAAAACCAACCCCGGATTCATCAAAACGAATACCGGGATCACACCATTTAAAGCATCAGTTACTGATGACAGAACCCTCACCTAAAGTTAAACCAAGACATGATTTGACTCCACCATCTGGTCTTATCAAACAAGTAGAAGGAGACGGGGCTCCTCCCAGGCCAAGACAAAGGACTCCCCCAAGCTTACTTCGACGTCCTTCGTTTCCGGGGAGAATGAGGCTGGCTGGGCATGATGTTCCAAATGCAGTTAATGATTCTGCGAAGCTAAGTCCGAGTAAAATAGAACAGGAGCCTGAGATGAGCCATTTTCAGTTTAACAATGGCGATGTTCGACATATTTCTAGACAGATTACTAGGGAACCTCAGAAGGCTTTTGAAAGAAGTTCCAAAGGAATGCAAACAGACAGCAGTAATTCTGCCTCATCTTCAGTTTCTATTCAAGGATATGAACATGCTGATGATGCTACAACTTTTGTTGACTTGAGAGAGCAGATGCATCCTGATCACGAAAGCGTAGCTGTAACCCACATTGTAGGTCCGGAATCATGTCCTGACAGAAGGCGACCGACAACAGGTTCACGGTGTAAGATGGTTGAAGAAGTGTCTGAGGAAACCTGTGAAGTCAACCTGAATTTTCAGAATACTATTAGTCATAATGAGAAAGTGAGTTCAAGTTTAACTCTTGATCACCCTGTTGAAAATTCTACAATAATGTATGCTTCAGAAGATAGTCTTACCAGAAATCAGACAACTACATCTTCTGCTTATGGGTGTGATAATAGATCTCTAGAACCCCCTTCTGAAGCCGCCAAAGGAATCAAAGATCTTCAAGATACTTCTAAAGAAATATCTTTGACCAAGTCTGTTAAACATCCACCCGCAATTGCTGGAGAAAGGTCAGTTTGTGAAGAAGTTGGTCCAGTGAGTAAACTCAACATTAGTCCTGATATAGTTAATCAACAAAACCTTGCTTGTAAGTCCACTGGTCATGACAAATTCACAGTGAGAGAGAGACTGTCATCGGTGACTGAAACTGCCCCTCTGATTACGACTACTCAAATAACAAGCCAGAAAGCTTTGCAAGAGAAAGAAACTGTCTTGACGAATCCAGCACCAGAAAAACCAGATACTGGACATCTTCCTACAGCCTTTGATGAAGTCATCCATGTGATACGCCACAGTAGTTACCGTGTTGGGAGTGAGCAGACAGTAAAGGAATCTGTGGAGATGGGAGCTCAAAATGTAGATCTTGGTAAATATATCAATATTGCGAGGGATGATGTAGAAATGAGAAACATAAGCTCTCCTTTGACCCTTAAATCTTCAAATTCCTCTGAAGCTGCAAGCTTGAAATCAAGTATTTCTGATCAATTGGAAATGAGAAACATGAGTACCCCTCCTACCATCAAACCTTCAAGTTTATCTGATGCTTCAAGCTTGAAATCAAGCATTTCTGATCACCCTGGTCTTAAGGAACCAGATGTGAGTGACCTTGTTTCTTTAGTTTCAGAACCTGATTCCCCTGAGCTTAGTAAATGCATCACTCCCACAACTGAAGACAAACCACCACTGGCGAAGGAAACAATGGACGTGAAATCTTTCAGGCAGCGAGCGGAGGCACTTGAAGAGCTCTTAGAATTTTCTGCAGAGTTGCTGCAGCAAGAAAGATTGGAAGAACTTAAAGTTGTCCTAAAGCCCTTTGGGAAAGACAAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAGGAGTCTTAAGGGAATGATGTCTGAGGAAAGTGGGGGAAGAAGTTCATGA 3168 0.4208 MESRMDQYEIMEQIGRGAFGAAILVNHKAERKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKQNGAYIPEEKLCKWFTQLLLAVEYLHSNYVLHRDLKCSNIFLTKDQDIRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRHAFKAFDMAGLISKINRSSIGPLPPCYSPALKILIKGMLRKSPEHRPTASEVLKHPYLQPYVDQYRPSFSPPTSFSPEKPINVTVRQKKMAESQNSSGSSSDKDSLMSNDRNIATAMPKCDNKATEMDIPSIDDDDDDADGSEHLPPSEEENGSSNGNTKTTEHEVMKPSHNEQCSNVESRQQPKTIRNIMMALKEGKVRDATSPMRGSRVKSGGVSTQKINPETLSNSKLPKPTFIAPSLKANLESPNVALAKPTPDSSKRIPGSHHLKHQLLMTEPSPKVKPRHDLTPPSGLIKQVEGDGAPPRPRQRTPPSLLRRPSFPGRMRLAGHDVPNAVNDSAKLSPSKIEQEPEMSHFQFNNGDVRHISRQITREPQKAFERSSKGMQTDSSNSASSSVSIQGYEHADDATTFVDLREQMHPDHESVAVTHIVGPESCPDRRRPTTGSRCKMVEEVSEETCEVNLNFQNTISHNEKVSSSLTLDHPVENSTIMYASEDSLTRNQTTTSSAYGCDNRSLEPPSEAAKGIKDLQDTSKEISLTKSVKHPPAIAGERSVCEEVGPVSKLNISPDIVNQQNLACKSTGHDKFTVRERLSSVTETAPLITTTQITSQKALQEKETVLTNPAPEKPDTGHLPTAFDEVIHVIRHSSYRVGSEQTVKESVEMGAQNVDLGKYINIARDDVEMRNISSPLTLKSSNSSEAASLKSSISDQLEMRNMSTPPTIKPSSLSDASSLKSSISDHPGLKEPDVSDLVSLVSEPDSPELSKCITPTTEDKPPLAKETMDVKSFRQRAEALEELLEFSAELLQQERLEELKVVLKPFGKDKVSPRETAIWLARSLKGMMSEESGGRSS* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1023 1055 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1023 1055 MobiDBLite consensus disorder prediction 584 600 - -
Lja3g1023 1055 MobiDBLite consensus disorder prediction 895 951 - -
Lja3g1023 1055 MobiDBLite consensus disorder prediction 414 437 - -
Lja3g1023 1055 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 1038 - -
Lja3g1023 1055 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Lja3g1023 1055 MobiDBLite consensus disorder prediction 479 525 - -
Lja3g1023 1055 MobiDBLite consensus disorder prediction 334 348 - -
Lja3g1023 1055 MobiDBLite consensus disorder prediction 703 723 - -
Lja3g1023 1055 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1023 1055 MobiDBLite consensus disorder prediction 352 367 - -
Lja3g1023 1055 MobiDBLite consensus disorder prediction 291 386 - -
Lja3g1023 1055 CDD STKc_Nek 7 262 - -
Lja3g1023 1055 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1023 1055 MobiDBLite consensus disorder prediction 291 316 - -
Lja3g1023 1055 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Lja3g1023 1055 MobiDBLite consensus disorder prediction 577 600 - -
Lja3g1023 1055 MobiDBLite consensus disorder prediction 895 942 - -
Lja3g1023 1055 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 1038 - -
Lja3g1023 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Lja3g1023 1055 Gene3D Transferase(Phosphotransferase) domain 1 90 333 - -
Lja3g1023 1055 Coils Coil 981 1015 - -
Lja3g1023 1055 MobiDBLite consensus disorder prediction 404 437 - -
Lja3g1023 1055 MobiDBLite consensus disorder prediction 703 717 - -
Lja3g1023 1055 SUPERFAMILY Protein kinase-like (PK-like) 4 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1023 Lja-Chr3 10516233 10523020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1023 14 263 MAP Kinase Kinase Kinase AT1G53570 31.373 1.41e-33 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lja3g1023 Pkinase 2.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1023 K08857 - gmx:100818747 1475.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1023 3 10516233 10523020 Lja3g1023 3 10516233 10523020 ECH
Lja3g3547 3 70438951 70445914 Lja3g1023 3 10516233 10523020 PCT