Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1019 ATGTCGGGCAAACGACCTCCCCCTGCCGCCGCCGACCCGCCGGACCAGATCATGCACTCCATGAAGCGTCAGCTCCCCTTCGTAGCAGCAGCTTCCGGTGATTACCATCGCTTCACCCCTGACCGCCGCCGGAACCCTGACCAAGTCGCCGAAGCCATCGTCGTCAAGACTCCACAATTGAAGCGGAAGAATGAAGCAGCTGATTTTGAAGCTGATTCAGGTGATAGGATGAATCCTGGGTCCACTGAAACAGCTATTAGTCCTTTTCAAACACCTTTATCAGGAAAGATGGGGAAGGGAGGCAAATCCTCTAGGCTAACAAAATGCATCAAATCTGCAACTCAAACCCCAGGACCAAATATTGGTTCTCCTTCAGCTAATAACCTCACTCCTGCTGGTTCATGTCGTTACGACAGCTCTTTGGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATGCTTGATCTGAATAAAGCGGCTGAGACATTAGAGGTACAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGGCTTATAGAAAAGAAGCTCAAGAACAGAATTCAATGGAAGGGTCTGGATGTTTCAAGACCAGGGCAGGGTGATGACAGTTTTGGTAGTTTACAGACAGAAGTTGAAAATTTAACAATAGAGGAGCGCCAGTTAGATGAACAAATAAGAGAGATGCAAGAGCGACTACGGGATCTTAGTGAAGATGAAAACAATGAGAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAAATTGCCCGGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGAACTACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCACAGAGGAGATACAGGATAGTCCTGAGAAGTACAATGGGCCCAATAGATGTTTACCTTGTTAGCCAATTTGAAGAAAAGTTTGAGGAGATTAATGGTGGAAATGTTGTATCAAATGTTCCATCAAGTCCAGAGTTCAACCAACATCAACCAACTGTGGTTCCAGATAGAGGAAAGGACATAGAAGTGCAGGGACAGGATGGCCAGGGGGCTAGTTCGGGTTTTACTACCTCTCAAGATTTCGAGAGTGGGATGATGAAGATTGTTCCTTCAGATGTTGCTAGTGATGCTGATTACTGGCTTATATCAGAGGCCGATGTTAGCATAACTGACATGTGGAGCTCAGAACTTACAGCTGGGGTTGAATGGAATACACTGGACACACTTCAAGATGTAATGACTCGTGAGCAAACTACAACCCCAAGTCATCATTCGAACGTCAGTGAAGTGGCTTCTGCATCAAACCCTACTGGAGGTTGA 1365 0.452 MSGKRPPPAAADPPDQIMHSMKRQLPFVAAASGDYHRFTPDRRRNPDQVAEAIVVKTPQLKRKNEAADFEADSGDRMNPGSTETAISPFQTPLSGKMGKGGKSSRLTKCIKSATQTPGPNIGSPSANNLTPAGSCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGQGDDSFGSLQTEVENLTIEERQLDEQIREMQERLRDLSEDENNEKLLFVTEEDIKKLPGFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGGNVVSNVPSSPEFNQHQPTVVPDRGKDIEVQGQDGQGASSGFTTSQDFESGMMKIVPSDVASDADYWLISEADVSITDMWSSELTAGVEWNTLDTLQDVMTREQTTTPSHHSNVSEVASASNPTGG* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1019 454 MobiDBLite consensus disorder prediction 65 104 - -
Lja3g1019 454 MobiDBLite consensus disorder prediction 429 454 - -
Lja3g1019 454 MobiDBLite consensus disorder prediction 353 374 - -
Lja3g1019 454 MobiDBLite consensus disorder prediction 77 91 - -
Lja3g1019 454 Gene3D - 130 203 IPR036388 -
Lja3g1019 454 CDD E2F_DD 212 318 IPR032198 GO:0046983
Lja3g1019 454 SUPERFAMILY "Winged helix" DNA-binding domain 136 199 IPR036390 -
Lja3g1019 454 SMART E2F_TDP_2 136 201 IPR003316 GO:0005667|GO:0006355
Lja3g1019 454 Coils Coil 217 255 - -
Lja3g1019 454 Pfam E2F/DP family winged-helix DNA-binding domain 138 201 IPR003316 GO:0005667|GO:0006355
Lja3g1019 454 Coils Coil 152 172 - -
Lja3g1019 454 PANTHER TRANSCRIPTION FACTOR E2FB 19 448 - -
Lja3g1019 454 PANTHER TRANSCRIPTION FACTOR E2F 19 448 IPR015633 GO:0000978|GO:0006357
Lja3g1019 454 Pfam E2F transcription factor CC-MB domain 217 317 IPR032198 GO:0046983
Lja3g1019 454 Gene3D - 211 318 - -
Lja3g1019 454 SUPERFAMILY E2F-DP heterodimerization region 215 318 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1019 Lja-Chr3 10459053 10463961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1019 16 453 E2F-DP Transcription Factor Family AT5G22220 53.766 7.21e-144 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lja3g1019 E2F_CC-MB 4.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1019 K06620 - gmx:100819817 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1019 3 10459053 10463961 Lja3g1019 3 10459053 10463961 ECH