Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1016 ATGTCTTCCAATTCCAATGACAAGAAAAGTGTGTTGAGAATTCTATTCACAGCAAATGGAAGCTGTGGTTGTGGCAAAACAAAGGCAATTGAAGTGCACGAGCCAACCAAAATACCCAAAATACCCTCCACCCATCACAAAAAGACAACAACAAACCAAACCAGCAGCAAGGCTTCCTCCACCACCACTTCCAACGACCACAACGGCGGCGCCATCTCCATCTCCTTCGACGACGAAGACGAAGAATTCTCCTCCGCCACCATCTCCGACACCGAAACCGCCACCACCAACAAGAGCCTCAACCACCACCACCGCCACCACGTGGCGCCGAAACAGAGCCCTCTGCTGAACAGCGTGGCGGTGGAGAAGGACTCATCGGATCCGTATCACGATTTCCGGCACTCGATGCTGCAGATGATCTTCGAGAAGGAGATAGATTCGGAGGAAGATCTTCAAGATCTTCTACAGTGTTTTCTCCACCTGAATGCTGCGTGTTACCATCATGTTATTGTGAAGGCTTTCAATGAGATCTGTGAAGATGCGTTTTCCGATAAGGTTAGCACTGCTCCGGCGACGACGGAGCCTTCTCCGTAG 594 0.5067 MSSNSNDKKSVLRILFTANGSCGCGKTKAIEVHEPTKIPKIPSTHHKKTTTNQTSSKASSTTTSNDHNGGAISISFDDEDEEFSSATISDTETATTNKSLNHHHRHHVAPKQSPLLNSVAVEKDSSDPYHDFRHSMLQMIFEKEIDSEEDLQDLLQCFLHLNAACYHHVIVKAFNEICEDAFSDKVSTAPATTEPSP* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1016 197 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 119 178 IPR006458 -
Lja3g1016 197 Pfam Transcriptional repressor, ovate 125 180 IPR006458 -
Lja3g1016 197 ProSiteProfiles OVATE domain profile. 121 180 IPR006458 -
Lja3g1016 197 MobiDBLite consensus disorder prediction 45 71 - -
Lja3g1016 197 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 7 185 - -
Lja3g1016 197 MobiDBLite consensus disorder prediction 33 76 - -
Lja3g1016 197 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 7 185 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1016 Lja-Chr3 10422764 10424178 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja3g1016 Ovate 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1016 - - gmx:102660065 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1016 3 10422764 10424178 Lja3g1016 3 10422764 10424178 ECH
Lja3g3553 3 70493721 70494621 Lja3g1016 3 10422764 10424178 PCT