Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0996 ATGGAAAATCTCCCACCTGGGTATCGCTTCTTCCCAACAGAAGAAGAGCTAGTTGGCTTTTACCTACTCAACAAGCTAGAAGGGAAAAGAAACAACATAGATAGAGTTATCCCAGTTATTGACATCAATGGAGTAGAGCCATGGCACCTTCCATCACTAGCAGGGGAGCTTTGTAGAGAGGATAAGGAGCAGTGGTTTTTCTTTGCACCTGGTCAAGAGAGAGAAGCTAGGGGAGGTAGACCTAGCAGAACCACAGCTAGTGGGTATTGGAAGGCTACAGGTTCTCCTGGCTATGTTTACTCTTCTGATAATAAAGTCATTGGGGTGAAGAAAACCATGGTGTTCTACAAAGGGAAAGCTCCAAGTGGAAGGAAAACCAAATGGAAGATGAATGAGTACAGAGCCATCCAAGTCTCTAATAACCAATCCAGCACTGCTACCCCTCAGCTGAGGAGGGAATTCAGCTTGTGCCGGGTGTATGTGATTTCGGGAAGCTTTCGATCATTTGATAGACGGCCATTAAAGAATGAAAGAGTGGAGTCGCGGCTGGTTCATGATGAGGCTGGAACTTCCCTCTTAGGGGGACTCCATGGTGGTGCTGGTGTGGCAGAGGCTGCTAGTGCTGTTGGAGGATCAAGCAGCACAAATTGGAATGTAAATAATGATGATAATGAGGTTCAGCTCCAAGAACCAGTATGGGAATGGGAATGGGAGCAATTTAATTGGATTTAA 732 0.459 MENLPPGYRFFPTEEELVGFYLLNKLEGKRNNIDRVIPVIDINGVEPWHLPSLAGELCREDKEQWFFFAPGQEREARGGRPSRTTASGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSFDRRPLKNERVESRLVHDEAGTSLLGGLHGGAGVAEAASAVGGSSSTNWNVNNDDNEVQLQEPVWEWEWEQFNWI* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0996 243 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Lja3g0996 243 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 243 - -
Lja3g0996 243 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Lja3g0996 243 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Lja3g0996 243 SUPERFAMILY NAC domain 2 160 IPR036093 GO:0003677|GO:0006355
Lja3g0996 243 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0996 Lja-Chr3 10240352 10241737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0996 7 242 NAC Transcription Factor Family AT5G22380 55.696 4.93e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g0996 NAM 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0996 - - cam:101497878 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0996 3 10240352 10241737 Lja3g0996 3 10240352 10241737 ECH