Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0986 ATGCCTCGGGGAAAAGCAAATTCTTCATCAATTGCTAAGCCAAATGAACCAGAAAAGCCGGTTGAATCTGATGAGAAGGTCGATTTGGACGAGGGAAATGATCCTGAGGAAGAAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGAAGAAGAAGTGGAAGAAGTAGAAGAGGAGGTGGAAGAGGTGGAAGAAGAGGAGGACCCGGAGGAGGTAGAGGTAGAGGAGGAGGAAGAGGAAGAGGAAGAGGAAGAAGAGGAGGAAGGAGTTGAAGAAGTGGAAGAGGATGATGCCAAGATGGAAGATGATGATGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCATGGGTCTGAAGTCTACATTGGTGGCTTTCCTCATGATTCCTCAACTGAGGATTTGAAAGCTTTTTGTGAGTCTATTGGGGAAGTTGTAGAGGTTCGAATAATGAAAGGAAAAGATTCTTCCGAGAACAAGGGCTTCGGTTTTGTGACTTTTAGAAATGCGGAATTGGCATCTAAAGCCATTGATGAGCTGAATAATACAGAATTTAAGGGTAAAAAAATAAGATGTTCAACATCTCAAGCGAAAAACCGTCTCTTTATTGGCAATGTTCCTAGAAGCTGGGGCGAGGAAGATCTGAGGAAAACTGTGACTGAGGCTGGACCTGGAGTTACCGCTGTAGAACTAGTTAAGGATGTGAAGAACATTAACAACAACCGCGGCTTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAGCATTCGAGGCAAAAGATGATGAGCCCAACATTTAAGCTAGGTGACAATGCCCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCTTCTCAGGTGAAAGCAGTATATGTGAAGAACCTTCCTAAGAATGTAACTCAAGAGCAGGTGAGGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTCCCACCACCAAAGTCTGGACAGGAAAAGAATAGAATCGGTTTTGTGCATTTTGCAGAGAGATCAAATGCTATGAAAGCATTAAAAAACACTAACAAATATGAAATAGAAGGTCAAGTTTTAGAGTGCTCTCTAGCGAAGCCACAGGCTGATCAAAAGCCTGGAGTATTACATACACAGAAGCAAGGACTACTTCCAAGATATCCACCAAGTGTTGGTTATGGTTTGCTTGGGGCTCCCTATGGCGCACTTGGTGCAGGATATGGTGCTCCCGGTCTTGCACAGCCTTTTATGTACGGAGCGGGTCAAACGCCCCCTGGAATGTCCATGATGCCTATGCTTCTGGCTGATGGACGCATTGGATATGTCTTGCAACAACCAGGACTGCAGCCGCAAGTTCCACCACCCTCACATCAAAGAGGTGGCAGGAGTGGTGGTGGTGGTGATAGTGGTGGGAGCAGCAACAGGAATTCTGGAAGTTCAAGTAAGGGAAGGCACAACAATGATGGCGGCCAAGGGCGTAGATATCGTCCATATTAG 1518 0.448 MPRGKANSSSIAKPNEPEKPVESDEKVDLDEGNDPEEEMEEEIEYEEVEEEEEEVEEVEEEVEEVEEEEDPEEVEVEEEEEEEEEEEEEEGVEEVEEDDAKMEDDDEKKKHAELLSLPPHGSEVYIGGFPHDSSTEDLKAFCESIGEVVEVRIMKGKDSSENKGFGFVTFRNAELASKAIDELNNTEFKGKKIRCSTSQAKNRLFIGNVPRSWGEEDLRKTVTEAGPGVTAVELVKDVKNINNNRGFAFIDYYNHACAEHSRQKMMSPTFKLGDNAPTVSWADPKNADSSASSQVKAVYVKNLPKNVTQEQVRKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTNKYEIEGQVLECSLAKPQADQKPGVLHTQKQGLLPRYPPSVGYGLLGAPYGALGAGYGAPGLAQPFMYGAGQTPPGMSMMPMLLADGRIGYVLQQPGLQPQVPPPSHQRGGRSGGGGDSGGSSNRNSGSSSKGRHNNDGGQGRRYRPY* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0986 505 SUPERFAMILY RNA-binding domain, RBD 291 381 IPR035979 GO:0003676
Lja3g0986 505 Gene3D - 284 393 IPR012677 -
Lja3g0986 505 SMART rrm2_1 123 196 IPR003954 GO:0003676
Lja3g0986 505 SMART rrm2_1 297 370 IPR003954 GO:0003676
Lja3g0986 505 MobiDBLite consensus disorder prediction 474 493 - -
Lja3g0986 505 Coils Coil 36 98 - -
Lja3g0986 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 265 IPR000504 GO:0003723
Lja3g0986 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 367 IPR000504 GO:0003723
Lja3g0986 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 194 IPR000504 GO:0003723
Lja3g0986 505 PANTHER RNA RECOGNITION MOTIF 1 474 - -
Lja3g0986 505 MobiDBLite consensus disorder prediction 1 129 - -
Lja3g0986 505 SMART rrm1_1 123 196 IPR000504 GO:0003723
Lja3g0986 505 SMART rrm1_1 203 280 IPR000504 GO:0003723
Lja3g0986 505 SMART rrm1_1 297 370 IPR000504 GO:0003723
Lja3g0986 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Lja3g0986 505 MobiDBLite consensus disorder prediction 27 102 - -
Lja3g0986 505 Gene3D - 7 202 IPR012677 -
Lja3g0986 505 MobiDBLite consensus disorder prediction 452 505 - -
Lja3g0986 505 SUPERFAMILY RNA-binding domain, RBD 119 288 IPR035979 GO:0003676
Lja3g0986 505 CDD RRM_SF 124 196 - -
Lja3g0986 505 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 474 - -
Lja3g0986 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 284 IPR000504 GO:0003723
Lja3g0986 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Lja3g0986 505 Gene3D - 203 283 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0986 Lja-Chr3 10108418 10121450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0986 144 457 Eukaryotic Initiation Factors Gene Family AT4G34110 25.070 9.49e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0986 K13161 - gmx:100806658 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0986 3 10108418 10121450 Lja3g0986 3 10108418 10121450 ECH