Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0979 ATGGCGAGCCAAACAATCGGAGAAACCGGTTTGTCTGAGTCAGGGCCTTCAACTCACCATGTTCCTTATGGAGTTCTTCATGGGATAACTACCTCTGCATCAGGATTAATTAATCAAGGGGAAGCTTTTGATTTTGGAGAGCTTGAAGAGGCAATTGTTCTCCAAGGATTTAAGATTAGAAATGATGAAGCCAAAGCAACTTTGTTCACAGGCAGGCCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAACAAACAACACCAAGAGTAGTAGCCTCTCTCAGTTCTCCATCTTTGACCAATCCATATGGAAGTTCAAAGTCAGGAGGGGAAAGCACTGAATCAGGATCAGGAATGAACACTCTTTCAACCAAAACTGAGCTTCAGTTTGAAACAGACTCTCCTACAAGTATAAAGGCATCTTCTTCAGACCATCATCATGCTTTTGATCAGCATCACCTGCAGCTTCAACAGCAAAAACAACACCAACTTCAACATGAGAAGACTACTGATCATGATGCCTCAAAAGCTGACCCACCACAGAATCAACCAGCAGCAAAATCAGCTCAGGAAAAGAGGAAAGGAGCAGGTTCAACATCAGAAAAGCCACTTGATGCAAAGACACTAAGGCGTTTAGCTCAAAACAGAGAAGCTGCAAAGAAAAGCCGTCTCAGAAAAAAGGCTTATGTGCAGCAGCTAGAGTCAAGTAGGTTAAAACTCTCCCACCTTGAACAAGACCTTCAAAGATTGCGCTCCCAGGGACTGTTCTTGGGTTGTGGTGTTGCTGGTGGCAATTTAAGCTCTGGAGCTGCAATGTTTGACATGGAGTACGCTAGGTGGTTAGAAGATGATCACCAGCACATGGCGGAGCTCCGTACGGGGCTGCAGGCGCCGTTGTCCGACAACGAACTCAGAGTCATTGTGGATGGGTATCTGTATCACTATGATGAGCTTTTCCGGTTGAAGGGGGTGGCTGCAAAATCAGATGTTTTTCACCTCATTAATGGCATGTGGACTTCCCCAACTGAGCGATGCTTCCTCTGGATAGGTGGTTTTAGACCCTCAGAGCTCATCACAATGTTGATACAACAATTGGAGCCTTTGGCAGAGCAGCAAATAGTGGGCATATATGGTCTGAGGCATTCATCACAACAAGCAGAAGAAGCTCTCTCACAGGGCCTCGAACAACTCCGCCATTTTCTCATTGACACGATCGCAGGTGCTCCTGTTGTCGACGGTGTGCAACAAATGGTCGTCGCCATGGGCAAGCTTGCCAACCTTGAAGGTTTTGTCCATCAGGCTGATAATTTGAGGCAACAGAGTATTCACCAATTATGTAGATTACTGACAATTCGTCAAGCAGCAAGGTGTTTTGTTGTGATTGGAGAGTATTATGGTCGTCTTCGAGCTCTTAGTTCTCTCTGGGCATCAAGACCACGAGATCACCAGCAGACTTTGATCAGCGATGATAACTCATGCCAAACAACCACGGAATTGCAAATGGTTCAATCTCACCAGGGTCATTTCTCTAATTTCTGA 1551 0.4571 MASQTIGETGLSESGPSTHHVPYGVLHGITTSASGLINQGEAFDFGELEEAIVLQGFKIRNDEAKATLFTGRPAATLEMFPSWPMRFQQTTPRVVASLSSPSLTNPYGSSKSGGESTESGSGMNTLSTKTELQFETDSPTSIKASSSDHHHAFDQHHLQLQQQKQHQLQHEKTTDHDASKADPPQNQPAAKSAQEKRKGAGSTSEKPLDAKTLRRLAQNREAAKKSRLRKKAYVQQLESSRLKLSHLEQDLQRLRSQGLFLGCGVAGGNLSSGAAMFDMEYARWLEDDHQHMAELRTGLQAPLSDNELRVIVDGYLYHYDELFRLKGVAAKSDVFHLINGMWTSPTERCFLWIGGFRPSELITMLIQQLEPLAEQQIVGIYGLRHSSQQAEEALSQGLEQLRHFLIDTIAGAPVVDGVQQMVVAMGKLANLEGFVHQADNLRQQSIHQLCRLLTIRQAARCFVVIGEYYGRLRALSSLWASRPRDHQQTLISDDNSCQTTTELQMVQSHQGHFSNF* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0979 516 SUPERFAMILY Leucine zipper domain 211 251 IPR046347 GO:0003700|GO:0006355
Lja3g0979 516 Gene3D - 210 259 - -
Lja3g0979 516 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 209 253 IPR004827 GO:0003700|GO:0006355
Lja3g0979 516 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 214 229 IPR004827 GO:0003700|GO:0006355
Lja3g0979 516 Coils Coil 230 257 - -
Lja3g0979 516 CDD bZIP_HBP1b-like 211 262 - -
Lja3g0979 516 ProSiteProfiles DOG1 domain profile. 274 482 IPR025422 GO:0006351|GO:0043565
Lja3g0979 516 PANTHER TRANSCRIPTION FACTOR TGA9 65 492 - -
Lja3g0979 516 SMART brlzneu 207 283 IPR004827 GO:0003700|GO:0006355
Lja3g0979 516 Pfam Seed dormancy control 291 366 IPR025422 GO:0006351|GO:0043565
Lja3g0979 516 MobiDBLite consensus disorder prediction 98 146 - -
Lja3g0979 516 MobiDBLite consensus disorder prediction 98 213 - -
Lja3g0979 516 MobiDBLite consensus disorder prediction 198 213 - -
Lja3g0979 516 PANTHER TRANSCRIPTION FACTOR TGA9 65 492 - -
Lja3g0979 516 Pfam bZIP transcription factor 210 251 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0979 Lja-Chr3 10066269 10074702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0979 155 516 bZIP Transcription Factor Family AT1G08320 67.123 1.93e-179 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja3g0979 DOG1 1.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0979 K14431 - gmx:100101904 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0979 3 10066269 10074702 Lja3g0979 3 10066269 10074702 ECH
Lja3g3593 3 71170883 71177980 Lja3g0979 3 10066269 10074702 PCT