Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0975 ATGGGTTTGATGGAGTGTGATGTGGAGGACAAGAATCTATGCCTTCATGCCCCAACATTCATTGAGTGGCTCAAACCATCTAATTCCTCTGCTTCATATCTAACTCCCACACCCCCATCATCATCATCAACAACACGAACATATTCTTCTGTGACTCAAAAGAAGCTTGTCCAAGAGACTATTCAACTCTTTCCAATTTTAAGTGGAAAGCCCTTGAAAGATGAAGATCATATTGGAACACAACAAGTGGAGGTGAAAGAGGAAAAGGTGGAACACGTGACTGTGGCTTTGCACATTGGATTGCCTGAAAACACTAGAGGAGATATTCTTGAAGGTGATGATGATGATGAGAAGATGGTTTTGAATGTTAAGGAAGAAGAGCCCTCCAAGAAAACCTTCAATGGCTGCTCTTTTAATCAGGAGAGAAGGTTTTGGATACCAACTCCTGCCCAGATCCTTGTTGGACCGATGCAGTTTGTTTGCTCCATATGCAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATTCAGAAAAGGACCAGACTCACTTAGAGGAACACAACCAGCTGCAATGTTAAGGCTACCATGCTATTGCTGTGCTCAGGGTTGCAAGAACAACATCAACCATCCTAGGGCTAAGCCTTTAAAGGACTTCAGAACACTCCAAACCCACTACAAAAGAAAGCATGGGACAAAGCCCTTCATGTGCAGAAAATTATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGCTCAGATTTCAAGCACAAGAGATCTCTCAAAGATCACATTAGATCCTTTGGAAAGGGTCATGACCCTCTTCTTCCTAATTCTCTTGATGAAGTTTTTGAGGAGGAGAATGAATGTGTTACCGGGTCGGATGAAGATGAAGTTCTTGCTCATGCATGA 981 0.4302 MGLMECDVEDKNLCLHAPTFIEWLKPSNSSASYLTPTPPSSSSTTRTYSSVTQKKLVQETIQLFPILSGKPLKDEDHIGTQQVEVKEEKVEHVTVALHIGLPENTRGDILEGDDDDEKMVLNVKEEEPSKKTFNGCSFNQERRFWIPTPAQILVGPMQFVCSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKLCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHDPLLPNSLDEVFEEENECVTGSDEDEVLAHA* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0975 326 SUPERFAMILY beta-beta-alpha zinc fingers 132 182 IPR036236 -
Lja3g0975 326 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 322 - -
Lja3g0975 326 Gene3D Classic Zinc Finger 158 181 - -
Lja3g0975 326 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
Lja3g0975 326 SUPERFAMILY beta-beta-alpha zinc fingers 229 264 IPR036236 -
Lja3g0975 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 186 IPR013087 -
Lja3g0975 326 MobiDBLite consensus disorder prediction 28 47 - -
Lja3g0975 326 Pfam C2H2-type zinc finger 159 178 - -
Lja3g0975 326 Gene3D Classic Zinc Finger 239 297 - -
Lja3g0975 326 PANTHER ZINC FINGER PROTEIN WIP2 1 322 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0975 Lja-Chr3 10017398 10023042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0975 9 315 C2H2 Transcription Factor Family AT1G08290 55.752 2.26e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g0975 zf-C2H2_6 6.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0975 - - gmx:100802773 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0975 3 10017398 10023042 Lja3g0975 3 10017398 10023042 ECH
Lja3g3598 3 71270603 71273907 Lja3g0975 3 10017398 10023042 PCT