Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0970 ATGGCGGAGGAACACCGGTGCCAAGCTCCGCGCCTCTGCGCGAACAACTGCGGCTTCTTCGGGAGTCCGGCGATGCAGGATCTCTGCTCAAAATGCTACCGCGATTTGCAGCTCAACGAGCAACAATCTTCCTCCGCGAAATTGGTCCTCAACCAAACCCTAGCCCCTCCGTTGTCGCTGTCTCCGGCGATCCCGCAGCCGTGCTCTTCTTCGGCGACGACGACGGAGCCGGTTGTTGTTGTTGTGGCTCCTTCTGCGCCGTCGGAGAAGGAGGGGCCGAGCCGGTGCGCGACGTGCAGGAGGCGCGTGGGGTTAACCGGGTTCAAGTGCCGGTGCGGGTTGATGCTTTGCGGGTCCCACCGGTACCCGGAGAAGCACGAGTGTGGGTTCGATTTCAAGGAATTGGGGAGGGAGCAGATCGCGAAGGCGAACCCGGTGGTGAAGGGTGAGAAGCTGAACAAGATCTGA 468 0.6154 MAEEHRCQAPRLCANNCGFFGSPAMQDLCSKCYRDLQLNEQQSSSAKLVLNQTLAPPLSLSPAIPQPCSSSATTTEPVVVVVAPSAPSEKEGPSRCATCRRRVGLTGFKCRCGLMLCGSHRYPEKHECGFDFKELGREQIAKANPVVKGEKLNKI* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0970 155 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 51 - -
Lja3g0970 155 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Lja3g0970 155 SMART AN1_Zf_4 96 133 IPR000058 GO:0008270
Lja3g0970 155 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Lja3g0970 155 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 155 - -
Lja3g0970 155 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Lja3g0970 155 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 155 - -
Lja3g0970 155 SUPERFAMILY AN1-like Zinc finger 85 150 IPR035896 -
Lja3g0970 155 Pfam AN1-like Zinc finger 96 132 IPR000058 GO:0008270
Lja3g0970 155 Gene3D - 1 54 - -
Lja3g0970 155 Gene3D - 68 151 IPR035896 -
Lja3g0970 155 ProSiteProfiles Zinc finger AN1-type profile. 90 136 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0970 Lja-Chr3 9983234 9984167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0970 1 155 C2H2 Transcription Factor Family AT3G52800 46.471 7.76e-46 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0970 - - gmx:106795660 217.238