Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0966 ATGTATAGCAATTTCAAGGAGCAAGCGATCGAGTACGTGAAGCAAGCGGTACACGAAGACAATGCTGGGAACTACGCAAAAGCCTTCCCTCTCTACATGAACGCCTTAGAGTACTTCAAAACGCATCTCAAATACGAGAAGAACCCTAAGATCAAAGAAGCCATCACGCAGCGTTTCACCGAGTATCTCCGCCGCGCCGAGGAGATCCGTGCTGTGCTTGATGATGGTGGCCCCGGCCCGGCTTCCAACGGGGACGCCGCTGTTGCTGCGCGGCCCAAGACGAAGCCTAAGGACGGCGGTGAAGGCGACGGCGGGGAGGATCCTGAGCAGGCTAAGCTTCGTGCTGGGCTGAATTCTGCTATCATCAGGGAGAAGCCGAATATCAAGTGGAATGATGTTGCGGGGTTGGAGAGCGCTAAACAGTCCTTGCAGGAGGCGGTTATCTTGCCTGTCAAGTTCCCTCAGTTCTTCACTGGTAAAAGACGACCTTGGAGAGCTTTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCCGTTGCAACAGAAGCTGATTCTACATTTTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTTCAAATGGCCCGCGAAAGTGCACCTTCTATCATATTTGTTGATGAAATTGATTCTCTCTGTGGTCAGCGTGGAGAGGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTAGTGCAGATGCAGGGTGTAGGAAACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTCTCGATCAGGCAATAAGGCGGCGCTTTGATAAGCGTATATACATTCCACTGCCAGATGTGAAGGCTCGCCAACACATGTTCAAGGTGCATTTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTTGAACACTTGGCTCGCAAGACAGAGGGATTTTCTGGTTCAGATATATCTGTCTGTGTGAAAGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAGTCCTGAGGGTATGTGGATTCCATGCGGACCAAAGCAACAGGGTGCAATACAAATAACAATGCAAGACCTTGCTACAAAAGGTCTTGCTTCTCAGATCCTTCCGCCACCTATATCAAGAACCGATTTTGACAAAGTACTTGCCAGACAAAGGCCTACAGTAAGCAAGTCTGACCTTGAAGTCCACGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGTTAA 1305 0.4728 MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQRFTEYLRRAEEIRAVLDDGGPGPASNGDAAVAARPKTKPKDGGEGDGGEDPEQAKLRAGLNSAIIREKPNIKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDVKARQHMFKVHLGDTPHNLAESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAIQITMQDLATKGLASQILPPPISRTDFDKVLARQRPTVSKSDLEVHERFTKEFGEEG* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0966 434 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Lja3g0966 434 Gene3D - 6 75 - -
Lja3g0966 434 Pfam ATPase family associated with various cellular activities (AAA) 168 297 IPR003959 GO:0005524|GO:0016887
Lja3g0966 434 CDD AAA 134 297 - -
Lja3g0966 434 PANTHER AAA DOMAIN-CONTAINING 1 434 - -
Lja3g0966 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 430 IPR027417 -
Lja3g0966 434 MobiDBLite consensus disorder prediction 73 110 - -
Lja3g0966 434 ProSitePatterns AAA-protein family signature. 269 288 IPR003960 GO:0005524|GO:0016887
Lja3g0966 434 SUPERFAMILY MIT domain 2 81 IPR036181 -
Lja3g0966 434 MobiDBLite consensus disorder prediction 91 110 - -
Lja3g0966 434 SMART smart 2 79 IPR007330 -
Lja3g0966 434 Gene3D - 126 422 IPR027417 -
Lja3g0966 434 Gene3D - 299 414 - -
Lja3g0966 434 Pfam Vps4 C terminal oligomerisation domain 367 431 IPR015415 -
Lja3g0966 434 SMART AAA_5 163 299 IPR003593 -
Lja3g0966 434 CDD MIT_VPS4 4 77 IPR045253 -
Lja3g0966 434 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0966 Lja-Chr3 9963400 9968009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0966 162 355 Calmodulin-binding Proteins AT3G56690 36.735 1.47e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0966 K12196 - gmx:100788150 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0966 3 9963400 9968009 Lja3g0966 3 9963400 9968009 ECH
Lja3g0966 3 9963400 9968009 Lja3g3600 3 71293235 71300641 ECH
Lja3g3601 3 71305447 71310629 Lja3g0966 3 9963400 9968009 PCT