Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0957 ATGAGCGGCGACGGCCGGAGATGGGACCGGAGAGACGCCGGCAACTCCAAGAAGCAGAAGCTGATCCGCAACGCCGAGGAAGAGCTCGAGGCGAAGTTAGGGTTCGATGTTTTCTCCGAGGGCAAAAAACGCCTCGGATGGTTGCTCACTTTTGCATCTTCATCTTGGGAGGATAACGATACCAACAAAGTCTTCAGTTGCGTTGATCTTTACTTTGTTACACAGGATGGGTCCACGTTCAAGTCAAAATACAGATTTCGTCCTTATTTTTATGCAGCTACAAAGGATAAAATGGAGATGGATGTTGATGCATATCTGAGACGACGTTATGAAGGTCAGATTGCAGATATTGAAATTATGGAGAAAGAAGATCTAGATCTTAAAAACCATTTGTCTGGATTGAGAAAATCTTATTTAAAGCTTTCATTTGATACTGTGCAACAATTGATGAATGTGAAGCGTGATCTTATGCATGTTGTTGAAAGAAATCAGGCAAAGTCTGATGCTGCAGAGGCCTATGAGTCCATATTAACAGGAAGAAGGAGAGATGAAAAACCTCAAGATTTTCTAGATTGCATTGTTGATCTTCGTGAATATGATGTTCCTTACCATGTTCGCTTTGCCATTGACAAGGATATACGGTGTGGCCAGTGGTATGACGTTGGAGTATCAAATAATGAGGTTACACTTGAGAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGACATTGAGACCACAAAACTTCCATTAAAGTTTCCTGATGCTGACTATGATTTAGTTATGATGATTTCATACATGGTAGATGGACAAGGGTATTTAATCATAAATAGAGAGTGTGTGGGGGATGATATAGAGGATCTAGAGTACACTCCAAAGCCAGAGTTTGAAGGGTATTTTAAGGTGACTAATGTTCTAAATGAGATTGAGCTTCTTAGGCTATGGTTTTCTCATATGCAAGAAGTGAAACCTGGTATCTATGTGACATATAATGGTGATTTCTTTGATTGGCCATTCCTGGAACGACGGGCAGCCCATCATGGGCTCAAGATGAGTGATGAATTGGGGTTTCAGTGCGACACAAATCAAGGGGAATGTCGTGCTAAATTTGCTTGCCATTTAGACTGTTATGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAAACCTGAAGGCTGTAACAAAAGCAAAGTTGGGTTATGACCCATTGGAGGTGAACCCTGAGGACATGGTTCGCTTTGCAAAGGAAAAGCCTCAGACGATGGCTTCGTATTCTGTTTCTGATGCAGTGTCAACTTATTACTTATATACAACTTATGTTCATCCCTTTATATTCTCTCTTGCAACTATTATTCCCATGTCGCCGGATGAGGTTTTGCGCAAGGGTAGTGGGACCCTCTGTGAAATGTTGCTTATGGTCCAGGCTTTCAAGGCCAATGTTATTTGCCCTAACAAGCACCAATCTGATCCAGAGAAATTTTATAAAAATCATCTTCTTGAAAGTGAGACGTACATAGGGGGCCATGTTGAATGCCTAGAAAGTGGTGTATTTAGATCTGATATTCCATGTAGTTTTACAGTCGAGCCATCAGCCTATGAGCAATTGATCAACAACCTTGAGCGAGATCTACGTTATGCTATAGAAGTAGAGGGTAAGATGGATTTGAAATCTGTCTCCAATTATGAGGAAGTAAAGAATGCTATCAGGGAAAAGCTTTTACAATTACGAGACACACCAATACGTGAAGAATGCCCTCTCATTTATCATCTGGATGTTGCTGCTATGTATCCAAACATAATTTTAACAAACCGGCTTCAGCCGCCTTCAATTGTTACGGATGAGATTTGCACTGCATGTGACTTTAACCGCCCTGGAAAGACTTGTCTACGCAAGCTTGAGTGGGTTTGGCGTGGGGAAACATTCACGGCAAAGAAGAGTGACTATTATCACTTAAAGAAGCAGATTGAGTCAGAGTTTACTTATGGTACTGATGGGAGGTCATCAAAATCTTTTCTTGATCTACCCAAGTTAGAGCAACAATCAAAACTAAAAGAGCGTTTGAAGAAATACTGCCAGAAGGCATATAAACGGGTACTTGACAAACCAGTTACTGAACTTCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTCTATGTGGACACTGTTCGCAGTTTCCGTGATAGAAGATATGAATATAAAGGCCTCAATAAGGTTTGGAAGGGAAAACTATCAGAGGCCAAGGCCAGTGGAAATTCTATAAAGATCCAGGAAGCACAAGATATGGTAGTGCTATATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTGGTCACATATACGGGTGCAAAAATCATTCAGAATGCCCGGTTGCTGGTAGAGAAAATAGGAAAACCGCTTGAACTAGACACAGATGGTATCTGGTGTGCACTTCCTGGATCTTTTCCAGAAAATTTCACCTTTAAAACAGAAGACTCAAAGAGGAAGTTGACAATCTCATACCCCTGTGTTATGCTTAACGTTGATGTGGCAAAAAATAATACAAATGATCAGTACCAGACACTCACAGATCCAATTAGGAAATCTTATAAAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATTATTCCTGCTTCTAAGGAGGAAGGAATTTTAATTAAGAAGCGTTATGCTGTATTTAATGACGATGGAACCCTCGCAGAGCTGAAAGGTTTTGAGATCAAGCGCAGAGGTGAATTGAAGCTAATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTGCATGGCTCAACCTTAGAGGAATGCTATTCAGTCGTCGCTTCAGTTGCAAACCGCTGGCTTGATCTTCTTGATAACCAAGGAATGGATATTGCAGATAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTTACCACTGCTAGACGTCTTGCTGACTTTCTTGGTGATACAATGGTCAGAGATAAAGGTCTTAAATGTCAGTACATAGTAGCAAGTGAACCTCAGGGAGCACCTGTAAGCGAGCGAGCTGTTCCTGTGGCAATATTTGAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGGAAATGGTGCAAGGTCTCATCAGATGCTGGCATTCGATCCATTATTGACTGGTCTTATTACAAGCAGCGGCTTAGTTCCACAATTCAGAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTAGCTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAAGATGACAAGTTTCGCCAACGGAAATTGGATGATATGTTTAATTCTATGAACAGAAAGGAGAGCTCAAAAAAGCATGATGATTCTAATGGTGTCCGCCTTGTGATGGATGATGAGACTGTTAATGACTTGGAGGACTTCGGAAGCAACGGCAGGAGTTCTACAGGCAGACCTAGGCCAATTATACGGCATTACGAAACTAATAATGAACGGCATTCAGTGAATCGCAATGGTCAAGAAGATTCAGAGCAACAATGTAACGACAGCAGCAGCATAGATCGGCCACCTTCACTATCACAAAAAGATGAAATATCCGGTGAAAATATTGACAAAAACGTAGACTATCAAGGATGGCTTCAATTGAAGAAGAGGAAGTGGAAAGATATGCTGGAAAAGAGAAAGAAGCGAAGATTGGACAATTCAGAGAAATCTGACCGCTTAAATGGCATTCTCGGACAAATAAATGGTAAGATAGATCAGGGCAGAAGTAATGTCAGTTCATATTTTAAAAGGCATGAGGTAGTCCTAACACGGTGCCACTGGCAGATTATACAGCTAATTCACAGTCCACAGATTGGCCAATTTTTTGCTTGGGTTGTTGTTGATGGCATTATGCTCAAGATACCTGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCTAGATCACCAATTAGTGATGAATTTCTTGGCAAACGTGTCAACAAGACTCTTCCTCATGGAAGACAGAGTAATAACCTGTATGAGGTCACAATTAATGAAGTTCAATTTAGGGAAGCAAGCAAAAAACTTGAAGCTCTCTTAGCAGATCCTGATGTTGAGGGAATATATGAAACCAAGGTGCCACTGGAGTTTAACGCTATAGTCCAGCTTGGTTGTGTGTGTAAGGTGGACAAATCTGCTAAAAGACGTAATCTACAAGAGCCATGGAATGTGAGTGAATTGCACATGAAGACCACGACCGAGTGTGGTTATTTTGAACAATCTATATCCTTCTTCTACTTGTACCATAGCATCTCTGAGGGACGGGCTATATATGTTGGATATTTTCCTGTATCCAAAGCAGTAACTGTTGTGGTAGTCAATCCCTATCAAAACAAAGATTTATCACCGATTTTTCTTGAAAGACAATATCACAGTGCTTGCCAAGCTTTGTCTATTGAGTCACCTCCGAGGAATGACATTCACTTTAAGGTGGACTATGTTGCTCAAGTCAAGGATGCTGAAACAGCAATGCAAAGAACAATAAATGATCACAGGAGTGAGCATCATGGGCCTATGGTTGCTGTAATTGAGTGCCCAAATGTCCAACTAGTAAAATTGGGCATTCGAGCTTTAGATGATTTTCCATGCCTGAGTATTCCTTCTAATGCGCGTGATAGTCAGTATCAGATTCTTGGATGGCAACAAGTTGCTGCTAAAATTGGAATGCAACGTTGTGCTGCATCAGTACAGTGGCTAAATGAGAGAATTGCTCTATCAAGATATGCCCATGTACCAGTGGGAAACTTTGAACTTGACTGGCTTATATTTACAGCGGATACCTTTTTTTCAAGAGCTTTGCGTGATAATCAACAGGTACTTTGGATATCTGATGATGGTCTTCCAGATTTGGGTGGCATTACTGGTGAAGAGAACTGTTTTATTGACGAGGTCCATCAACCTGTTCTCACGTATCCTGGAGCTTATAGAAAAGTTACTGTGGAGCTAAAGCTACACCACCTGGCTGTAGATGCTCTGCTAAAATGCAACCAAGTCAATGAAATGGAAGGAGGCGCTTTGTTAGGATTTGATCATGAATTTGATTCCGAAGCATTTTCCGTGGATGGTCAGAACAGCTTTGACGAGTCTACTTCATGTGCACATGCGTTTCGGGTCCTAAAACAGTTGATTCAGCGGTGCCTTGCAGATGCAGTTACATCTGGAAATGTTTTTGCTGATGCAATGTTGCAACATCTGTATCGATGGCTCTGCAGCCCTCAATCAAAACTTCACGATCCAGCTCTTCACCGGCTACTCCACAAGGTCATGCAAAAGGTCTTCGCATTGTTGTTGGCAGAGTTCCGCAAGTTGGGTGCAACAATTGTATTTGCAAACTTCTCCAAGATTATTATAGACACAGGGAAATATGATCTGTCTACAGCCAAAGCTTACTGTCATAGTTTGTTAAGAACTGTACAATCCAGAGACCTATTTGAATGGATTGAGCTTGAACCACTTCAATTTTGGCTCTCATTGTTATTCATGGACCAGTATAACTACGGTGGAATACCAGCAAAATCTGATGAAGCCATAAATGATGAGTCTCAAGTTGACATTATATCGAGCTGGAATATTGCCGAATACTTACCAAAGAAAGTCCAAGACCATTTTATTTTCATCGTTTCTCAATTCATGTACATTCCTTGGAATTATGCACAAAAACAAGCAGCAATCAGGGCTTCATTGCAGAATGACGACTCCTGCACCCCATCAATTAACATTGGAGCTGCAGAGGCGGTTGAATCAGAAATAACAGAGTATATTAAAGGGCAGATTAGCTCTTACTTCACAGACAAACTGTTAGGAGTTGTTCGTGATATGAAGAGGATGACCAGCTCAGTAAATGACCAGAGTTCATCATCTGTCCTTCCTCAACCGACGGGTGATCTCCATAGAGGGGATGCAGCCTTGGAATTTATCAAGCACGTCTGCGCTGTCCTGGCCCTCGATCACAGTGTGCAACATGATATTTTGGTTATGAGAAAGAATTTGTTAAAATATGTTAAAGTCAGGGAGTTTGCTCCAGAAGCCGAGTTCCGTGATCCTTGCCATTCTTTCATCTTATCCAATGTCATATGCAGCTATTGTAATGACTGCAGAGACATGGATTTGTGCCGTGACTCAGCTTTAATGACGGAGGAGTGGCGTTGTGCCGTACCTCAGTGTGGCCAACCTTATGATCGTGAGGTGATGGAGAATGCTCTCCTTCAAATCGTACGACAAAGGGAGCGACTATACCACCTGCAAGATTTGGTTTGTCTCAGGTGCAGCCAGGTGAAAGCTGCACATTTGGCTGAGCAATGTGCATGTGCTGGCTCATTTAGGTGCAAGGAAGATGTAAGTGAATTTCGCACAAAGATGCAGGTTTTCTTGAGTATAGCTTCTCGTCAAAAGTTCCAACTTCTCCAAGAATGTACCTCCTGGATTTTAGAACTTAGATAG 6630 0.4158 MSGDGRRWDRRDAGNSKKQKLIRNAEEELEAKLGFDVFSEGKKRLGWLLTFASSSWEDNDTNKVFSCVDLYFVTQDGSTFKSKYRFRPYFYAATKDKMEMDVDAYLRRRYEGQIADIEIMEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMNVKRDLMHVVERNQAKSDAAEAYESILTGRRRDEKPQDFLDCIVDLREYDVPYHVRFAIDKDIRCGQWYDVGVSNNEVTLEKRTDLLQRAEVRICAFDIETTKLPLKFPDADYDLVMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPEFEGYFKVTNVLNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGLKMSDELGFQCDTNQGECRAKFACHLDCYAWVKRDSYLPQGSQNLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQTMASYSVSDAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAFKANVICPNKHQSDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFTVEPSAYEQLINNLERDLRYAIEVEGKMDLKSVSNYEEVKNAIREKLLQLRDTPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGETFTAKKSDYYHLKKQIESEFTYGTDGRSSKSFLDLPKLEQQSKLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTEDSKRKLTISYPCVMLNVDVAKNNTNDQYQTLTDPIRKSYKTHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGMDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLKCQYIVASEPQGAPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDAGIRSIIDWSYYKQRLSSTIQKIITIPAAMQKVANPVPRVAHPDWLHKKVREKDDKFRQRKLDDMFNSMNRKESSKKHDDSNGVRLVMDDETVNDLEDFGSNGRSSTGRPRPIIRHYETNNERHSVNRNGQEDSEQQCNDSSSIDRPPSLSQKDEISGENIDKNVDYQGWLQLKKRKWKDMLEKRKKRRLDNSEKSDRLNGILGQINGKIDQGRSNVSSYFKRHEVVLTRCHWQIIQLIHSPQIGQFFAWVVVDGIMLKIPVSVPRVFYLNSRSPISDEFLGKRVNKTLPHGRQSNNLYEVTINEVQFREASKKLEALLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKSAKRRNLQEPWNVSELHMKTTTECGYFEQSISFFYLYHSISEGRAIYVGYFPVSKAVTVVVVNPYQNKDLSPIFLERQYHSACQALSIESPPRNDIHFKVDYVAQVKDAETAMQRTINDHRSEHHGPMVAVIECPNVQLVKLGIRALDDFPCLSIPSNARDSQYQILGWQQVAAKIGMQRCAASVQWLNERIALSRYAHVPVGNFELDWLIFTADTFFSRALRDNQQVLWISDDGLPDLGGITGEENCFIDEVHQPVLTYPGAYRKVTVELKLHHLAVDALLKCNQVNEMEGGALLGFDHEFDSEAFSVDGQNSFDESTSCAHAFRVLKQLIQRCLADAVTSGNVFADAMLQHLYRWLCSPQSKLHDPALHRLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSTAKAYCHSLLRTVQSRDLFEWIELEPLQFWLSLLFMDQYNYGGIPAKSDEAINDESQVDIISSWNIAEYLPKKVQDHFIFIVSQFMYIPWNYAQKQAAIRASLQNDDSCTPSINIGAAEAVESEITEYIKGQISSYFTDKLLGVVRDMKRMTSSVNDQSSSSVLPQPTGDLHRGDAALEFIKHVCAVLALDHSVQHDILVMRKNLLKYVKVREFAPEAEFRDPCHSFILSNVICSYCNDCRDMDLCRDSALMTEEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCLRCSQVKAAHLAEQCACAGSFRCKEDVSEFRTKMQVFLSIASRQKFQLLQECTSWILELR* 2210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0957 2209 Gene3D Palm domain of DNA polymerase 755 938 IPR023211 -
Lja3g0957 2209 Pfam DNA polymerase family B, exonuclease domain 74 401 IPR006133 -
Lja3g0957 2209 MobiDBLite consensus disorder prediction 1156 1183 - -
Lja3g0957 2209 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 33 2206 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Lja3g0957 2209 MobiDBLite consensus disorder prediction 1222 1246 - -
Lja3g0957 2209 CDD DNA_polB_epsilon_exo 241 444 - -
Lja3g0957 2209 CDD POLBc_epsilon 504 1123 - -
Lja3g0957 2209 Gene3D - 942 1126 IPR042087 -
Lja3g0957 2209 SUPERFAMILY DNA/RNA polymerases 487 1115 IPR043502 -
Lja3g0957 2209 SMART polmehr3 240 843 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja3g0957 2209 Coils Coil 566 586 - -
Lja3g0957 2209 SMART DUF1744_2 1515 1899 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Lja3g0957 2209 Gene3D - 239 469 IPR036397 GO:0003676
Lja3g0957 2209 MobiDBLite consensus disorder prediction 1206 1221 - -
Lja3g0957 2209 Pfam Domain of unknown function (DUF1744) 1530 1899 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Lja3g0957 2209 Pfam DNA polymerase family B 757 1059 IPR006134 GO:0000166|GO:0003677
Lja3g0957 2209 Gene3D DNA Polymerase, chain B, domain 1 56 233 - -
Lja3g0957 2209 MobiDBLite consensus disorder prediction 1156 1249 - -
Lja3g0957 2209 SUPERFAMILY Ribonuclease H-like 56 468 IPR012337 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0957 5 2206 Core DNA Replication Machinery Family AT2G27120 67.967 0.0 3067
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0957 K02324 - gmx:100812003 3825.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0957 3 9804436 9830583 Lja3g0957 3 9804436 9830583 ECH