Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0956 ATGAGGACACTGAACAGTGAAGCACTGAACTCTATTAATTTACGATTTTGCCACTGTTCCCAATTCCTCTCTCCAACCCCAATTTCCTCATTCCATGTTCCCTGTTCTCTGAAAAACCCAACCCCATCTGCTATTTCCTGCAAAAATCGAATCTTTTCTCCGGTTCAAGCTTCCATGGCTTCATCCACCACTGTCTCAGACACGGATACGAAGCCATTCTCCGTTCTCTTTGTGTGCTTGGGCAATATCTGCAGGAGCCCAGCTGCTGAAGGAGTCTTCACTGACTTGGTCAAGAAAAAGGGTCTCGATTCCAAGTTCAGAATCGATTCTGCTGGCACAATTGGTTACCACGAGGGCAATGAAGCTGATCCAAGAATGAGGGCAGCCTCGAAAAGGCGTGGGATTCAGATAACTTCTATTTCAAGGCCAATCAAGCCCTCTGATTTCATTGACTTTGATCTCATTCTTGCCATGGACAAGCAAAACAGAGAGGACATATTGGAGGCCTTCAATAGATGGAGATTTAGACAGACTTTACCGGAAGATGCACATAAAAAGGTTAAGTTGATGTGCTCATATTGTAAGAAGCATGATGAAACCGAAGTACCAGATCCTTACTATGGTGGACAACAAGGGTTTGAGAAGGTATTAGATTTGCTTGAAGATGCTTGCGATTCATTGCTGGAAAACATATTGGCAGAAAACAAACATATACAAGAATCTTAA 726 0.4311 MRTLNSEALNSINLRFCHCSQFLSPTPISSFHVPCSLKNPTPSAISCKNRIFSPVQASMASSTTVSDTDTKPFSVLFVCLGNICRSPAAEGVFTDLVKKKGLDSKFRIDSAGTIGYHEGNEADPRMRAASKRRGIQITSISRPIKPSDFIDFDLILAMDKQNREDILEAFNRWRFRQTLPEDAHKKVKLMCSYCKKHDETEVPDPYYGGQQGFEKVLDLLEDACDSLLENILAENKHIQES* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0956 241 PRINTS LMW phosphotyrosine protein phosphatase signature 75 92 IPR017867 GO:0004725|GO:0006470
Lja3g0956 241 PRINTS LMW phosphotyrosine protein phosphatase signature 118 134 IPR017867 GO:0004725|GO:0006470
Lja3g0956 241 PRINTS LMW phosphotyrosine protein phosphatase signature 202 217 IPR017867 GO:0004725|GO:0006470
Lja3g0956 241 SUPERFAMILY Phosphotyrosine protein phosphatases I 71 231 IPR036196 -
Lja3g0956 241 CDD LMWPTP 74 229 - -
Lja3g0956 241 Gene3D - 56 236 - -
Lja3g0956 241 SMART LMWPc_2 73 230 IPR023485 -
Lja3g0956 241 Pfam Low molecular weight phosphotyrosine protein phosphatase 75 228 IPR023485 -
Lja3g0956 241 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 10 236 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0956 14 235 Protein tyrosine phosphatase (PTP) family AT3G44620 59.200 1.91e-94 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0956 K25307 - gmx:100797254 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0956 3 9798198 9800973 Lja3g0956 3 9798198 9800973 ECH