Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0953 ATGGCGACGGAGGACACTGTATCATCAAACCCTAACCATGGAGAAAAACGACCAAAAGTGGTGGTTATAACAGGCCCCACCGGTTCCGGGAAGTCGAGGCTCGCCGTCGATTTAGCCTCCCACTTCCCCGTCGAAGTCATCAACGCCGATTCCATGCAGGTCTACAGTGGTCTCGATGTTCTCACCAACAAAATCCCCATATCCGAGCAAAACGGAGTGCCGCACCATCTCCTCGGAACCGTATCCCCAACCGTCGAATTCACCGCCAAAACCTTTCGCGATTCTGCTATTCCTATCATTGATGCTATATTGGCTCGCAACCACTTACCAGTTATAGTTGGGGGCACCAATTACTATATCCAGGCTCTTGTGAGTCAGTTTCTCTTAGATGAATCGATGGATGATATGAATGATAGCTGTTGTTTGGGTGATCTACCTGGTGTCATGTGGTCTGATAACAGCTTCATTGCGGAAAGTGACAGTTCAAACGATTTTAATTATGATCTACTTAAAGATATTGATCCAATTGCAGCAAATAGAATCCATCCAAATAATCATAGAAAGATAAATCAATATATTAGTTTGTACGCTCGCACTGGTGTTCTTCCGAGCAAAGTTTTTCAAGGAGAGGCGGCAGAGAAGTGGGGTCAAGTTGATAACTTAAGATATGATTGCTGTTTTATATGCGTGGACGCATCTCTCCCTGTATTGGACAGATATGTAGAGCAGAGAGTAGATTGCATGATGGATGCTGGATTACTCAATGAAGTCTATGACATTTACAATTTGAATGCAGATTATAGCAGAGGTTTGCGGCAGGCCATTGGTGTCCGTGAATTTGAGCCTCTTCTTAGAACTTTTGTTCTCAAGGACATCTATGAAAGAGAGAAGGAGTTGACCGGAGGATCCACCATAGAGAAGCGTGAGACATTGTCTAATGGTAATCTGATGGAGTGGTTAAGATCTTACTCTGATGCTAAATCCATGATTCTTATGGAAGAAGCAATTGAAAAAGTGAAGGTTAATACCCGGAGACTTGTTCGCCGTCAGAAGAGGATGCTCAATCGACTGCAAATGCTGTTTGGTTGGAACATACACTCTGTTGATTCCACAGAATCAATATCAAGTAAATCAGATGATGTTTGGAAAGGTCAAGTGGTTGAATCTAGCATGAAGATAGTTAACTCATTCCTGAGTGAGAATGGAAGCATGTCATCCACCTGTAGCATGTCAAATGACACTGGGATGAAAATAGTCCAAAGGGACCTCTGGACTCAATACACATGCAAGGCCTGTGGTGATCGGGTGCTTAGAGGATTACATGAATGGGAGCAACACAGACAAGGCCGTGGGCATGGAAAACGTATCTCTAGTCTCAAGAGGAAGTCACAAGGTCTTAATTTCTATGAAACAGAAGCGGGAGCATTCTAA 1431 0.4368 MATEDTVSSNPNHGEKRPKVVVITGPTGSGKSRLAVDLASHFPVEVINADSMQVYSGLDVLTNKIPISEQNGVPHHLLGTVSPTVEFTAKTFRDSAIPIIDAILARNHLPVIVGGTNYYIQALVSQFLLDESMDDMNDSCCLGDLPGVMWSDNSFIAESDSSNDFNYDLLKDIDPIAANRIHPNNHRKINQYISLYARTGVLPSKVFQGEAAEKWGQVDNLRYDCCFICVDASLPVLDRYVEQRVDCMMDAGLLNEVYDIYNLNADYSRGLRQAIGVREFEPLLRTFVLKDIYEREKELTGGSTIEKRETLSNGNLMEWLRSYSDAKSMILMEEAIEKVKVNTRRLVRRQKRMLNRLQMLFGWNIHSVDSTESISSKSDDVWKGQVVESSMKIVNSFLSENGSMSSTCSMSNDTGMKIVQRDLWTQYTCKACGDRVLRGLHEWEQHRQGRGHGKRISSLKRKSQGLNFYETEAGAF* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0953 476 Gene3D - 18 422 IPR027417 -
Lja3g0953 476 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 16 401 IPR039657 -
Lja3g0953 476 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g0953 476 TIGRFAM miaA: tRNA dimethylallyltransferase 20 298 IPR018022 GO:0008033
Lja3g0953 476 Hamap tRNA dimethylallyltransferase [miaA]. 20 376 IPR018022 GO:0008033
Lja3g0953 476 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 16 401 - -
Lja3g0953 476 Gene3D - 154 210 - -
Lja3g0953 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 265 IPR027417 -
Lja3g0953 476 Pfam IPP transferase 53 352 - -
Lja3g0953 476 Gene3D Classic Zinc Finger 423 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0953 Lja-Chr3 9772714 9776669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0953 23 460 C2H2 Transcription Factor Family AT2G27760 56.009 1.29e-171 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0953 K00791 - gmx:100792690 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0953 3 9772714 9776669 Lja3g0953 3 9772714 9776669 ECH