Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0944 ATGGAAGCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGACAAACTGTTAAAGTAGAACCATCTGAACCATTCCCTGGATACATTCACATTTCTCAGGCTGCACTTGGGGAAGCAACTAAAAAAGACAAAGCAGCTGAACCTGTGATTCTATACTTGAAAGTTGAGGATAAGAAGTATGTTTTGGGAACTCTTAACAGGGATGACATCCCTCATCTGTCTATGGATTTAGTCCTAGATGATAAGTCTGAGCTTTCCCACAACTCAAAGGGTGCTAGTGTCTACTTTTGTGGCTACAAAGTTCTAACTGATGATGGCGATGCTTCTGACTTCTCTGAAAGTGATGAAGAGGAAGAGGAATTGATGGAGCAAGAGAATGGCAAACCTGAAACAAAAACTGAAGATGCTAAGGTTGCTAAAACGGCAAAACCTGCTGCCGCTGCTGGTCCATCAGCAAAACAAGTAAAGATTGTTGATCCCAAGAAAGATGAGGAAGAGGCTGATTTGGATGTATCATCGCCTGATGTGTCTGGTTATGAAGATGATCTTATAAGTGCTGATGAGGATAGTGATGATGAGAGTGATGATGAAAGTGATGATGAGGAAGAGACCCCTACCCCTGCTAAGAAGGTGGATCAGGGAAAAAAGAGACCCAATGAATCTGCTTCAAAAACTCCAGTTTCTGGCAAGAAAGCCAAAAATGCTACTCCAGAAAAGCCTGATGGTAAGAAAAATGTGCATACTGCAACTCCTCACCCTAAGAAGCAGGATGGGAAAACTCCCAACAGTTTTGGAAAGAATAAGAGTCCCAATTCTGGCGGAAAGTTCTCTAACAAAAGTGGTGGTAGCAAGCCTTTCAACTCCAACAAGGGTGGTCGTCAAAAGAAGTAA 894 0.4262 MEAPMEFWGVEVKVGQTVKVEPSEPFPGYIHISQAALGEATKKDKAAEPVILYLKVEDKKYVLGTLNRDDIPHLSMDLVLDDKSELSHNSKGASVYFCGYKVLTDDGDASDFSESDEEEEELMEQENGKPETKTEDAKVAKTAKPAAAAGPSAKQVKIVDPKKDEEEADLDVSSPDVSGYEDDLISADEDSDDESDDESDDEEETPTPAKKVDQGKKRPNESASKTPVSGKKAKNATPEKPDGKKNVHTATPHPKKQDGKTPNSFGKNKSPNSGGKFSNKSGGSKPFNSNKGGRQKK* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0944 297 MobiDBLite consensus disorder prediction 256 290 - -
Lja3g0944 297 Pfam Nucleoplasmin-like domain 7 101 IPR041232 -
Lja3g0944 297 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 5 290 - -
Lja3g0944 297 MobiDBLite consensus disorder prediction 126 140 - -
Lja3g0944 297 Gene3D Nucleoplasmin core domain 2 108 - -
Lja3g0944 297 MobiDBLite consensus disorder prediction 204 220 - -
Lja3g0944 297 MobiDBLite consensus disorder prediction 182 203 - -
Lja3g0944 297 MobiDBLite consensus disorder prediction 235 255 - -
Lja3g0944 297 MobiDBLite consensus disorder prediction 108 297 - -
Lja3g0944 297 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 5 290 - -
Lja3g0944 297 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0944 Lja-Chr3 9630149 9633841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0944 5 292 C2H2 Transcription Factor Family AT5G03740 36.656 2.25e-30 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0944 3 9630149 9633841 Lja3g0944 3 9630149 9633841 ECH
Lja3g3628 3 71834642 71837564 Lja3g0944 3 9630149 9633841 PCT