Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0943 ATGGCGGAGCACTTGGCATCGATCTTCGGCACCGAGAAAGACAGAGTCAACTGCCCTTTCTACTTCAAGATCGGCGCCTGCCGCCACGGCGACCGCTGCTCGCGCCTCCACACAAAACCAAGCATCAGCCCAACGCTGCTACTCTCCAACATGTACCAGCGTCCGGACATCGTCACCCCCGGCGTCGACGCCCAGGGTCAGCCCATCGACCCCCGCAAGATCCAAACCCACTTCGATGACTTCTACCAAGACCTCTTCGATGAACTCTCCAAGTACGGTCGACTTCAAACGCTCAACGTTTGTGATAATCTCGCTGATCACATGGTTGGTAATGTTTATGCTCAGTTCAGGGAGGAAGAACACGCTGCTGAGGCGCTTAAGAATCTCACTGGAAGATTTTATGCTGGTTTGTCTTCTGCAGCTTCATTTTCATTTTATCCACGTGATTTGACTTGTTTAACTCCTACTTGCAGGCAGTATGAGGAGGATTCTTGTAACCGGGGAGGCTATTGCAACTTTATGCACTTGAAAAAAATTAGCAGGGAATTGAGGCGTGAGTTGTTTGGGATGGACAACCGTGGCAGGCATGGCCGAAGCAGGAGTCCTGACAGGCATCGAAGCAACGAGGACCGCTCTCCTCGTGGTCATAGCAGAAAATATGATGAAAGGAGTCATCACCATGAAAGTCGTGGCAGGAGACGCAGGAGCAACAGCCCTGGCCATCGGAGAGGAAGAAGTCGAAGTCCTCGTGGAAGTAGGGAGCGCAGACCAGCCAGGGATGGCAGTGAAGAGAGACGTGCCAGAATTGAGCAATGGAACAGGGAGAGGGAAGAGCAAAAACATGAAAGTAAAGTTAGTACTGAGGAAAACAATGCTGGTAACAATGGGCATGTGCAAGATAGTAATGAGCAATGGAACAGGGAAAGGGAAGAGCAAAAACATGAAAGTAAAGTTAGTACTGAGGAAAACAATGATGGTAACAATGGGCATGTGCAAGATGGTAACGAGCATCATGATTATCAGCAGCAACAGCAACAACCTCTGGAAGGAGGATATGATTACTGA 1065 0.4977 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTPGVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEEHAAEALKNLTGRFYAGLSSAASFSFYPRDLTCLTPTCRQYEEDSCNRGGYCNFMHLKKISRELRRELFGMDNRGRHGRSRSPDRHRSNEDRSPRGHSRKYDERSHHHESRGRRRRSNSPGHRRGRSRSPRGSRERRPARDGSEERRARIEQWNREREEQKHESKVSTEENNAGNNGHVQDSNEQWNREREEQKHESKVSTEENNDGNNGHVQDGNEHHDYQQQQQQPLEGGYDY* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0943 354 MobiDBLite consensus disorder prediction 302 321 - -
Lja3g0943 354 PANTHER SPLICING FACTOR U2AF SMALL SUBUNIT A 1 301 - -
Lja3g0943 354 MobiDBLite consensus disorder prediction 189 227 - -
Lja3g0943 354 Coils Coil 262 289 - -
Lja3g0943 354 MobiDBLite consensus disorder prediction 251 287 - -
Lja3g0943 354 PRINTS U2 auxiliary factor small subunit signature 75 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja3g0943 354 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja3g0943 354 PRINTS U2 auxiliary factor small subunit signature 103 125 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja3g0943 354 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja3g0943 354 PRINTS U2 auxiliary factor small subunit signature 168 180 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja3g0943 354 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Lja3g0943 354 MobiDBLite consensus disorder prediction 338 354 - -
Lja3g0943 354 Coils Coil 302 322 - -
Lja3g0943 354 MobiDBLite consensus disorder prediction 228 250 - -
Lja3g0943 354 CDD RRM_U2AF35B 44 144 - -
Lja3g0943 354 Gene3D - 43 144 IPR012677 -
Lja3g0943 354 MobiDBLite consensus disorder prediction 189 354 - -
Lja3g0943 354 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 301 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja3g0943 354 ProSiteProfiles Zinc finger C3H1-type profile. 151 178 IPR000571 GO:0046872
Lja3g0943 354 SUPERFAMILY RNA-binding domain, RBD 77 136 IPR035979 GO:0003676
Lja3g0943 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Lja3g0943 354 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Lja3g0943 354 SMART c3hfinal6 151 177 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0943 Lja-Chr3 9623979 9627549 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja3g0943 zf-CCCH 5.9e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0943 K12836 - cpap:110815581 406.371