Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0940 ATGGAGGACCAGGCTCATTCCCAGAATTCCACCCTGCAGAACGGGTCAGAAATCAACAAGGAGCAAGTGGCGGCGGCGGCGGCCGCCGGAGGCGGCGGAAACACCGCACCAGAATCCGCCGTCGGAGAAGCGTCTGTGGCTGCAGGATCAGGACAGGTGGTGAAAAGGGGGAGGGGGAGGCCACGGAAAAACCAGGCTAATGGGAGCCACCCGCCGCCGGCGACGCCGCCGCAGCCGGAATTGGCTATTCAACTTTATGGAGGAGGTGATGTTGTCAAGCGAGGCAGGGGACGCCCTCGTGGTTCTGGGAAGCTGCAGATTCTGGCTTCCATTGGGGGATTAGTCACTGAAACAGCCGGGGGAGGCTTCACTCCTCATGTGGTGAATGTGAACACTGGGGAGGATGTGGTCAGCAAGATAATATCATTTTTTCAGAAAGGCCCTAGGGCAGTTTGTATACTTTCTGCTAATGGTCCTATATCAAGTGTCACCATTCGCCCACGTGGTGCTACTAATATTTTGAGATATGAGGGTCACTTTGAAATTTTGTCCTTAATTGGATCATGGACCTCTTCTAGAGATGGGGGTGCATGTATGAAAAATAGTCAGTTAACTGTTTCATTGGCTAAACCCGATGGAACGGTTTTCGGCGGGAATGTTGAGAGCTCATTAATAGCGGCTGGCCCCATTCAACTTATACTGGCCACTTTCAAACAAAACATTAGCAATCAAATTAAGAAAAGGCGCTCAAATGGATCATCCAATGTTCCAAGCATGGCAGGTAATCCAGATTCAACAAAAGTGGATCTCCAGAAAGTTCCTAAGTTGACAGAAGGCGAGTCCAGTTGTCCTTCACCAACATCAACACTAAGGCTAATAGCACCAAGCAATGGCTTAGTTGATGATCCCATTACTGAAACAACAAATGCAGTGCCAGAAAATGTCACTATTGCAGACAAGAATATGCATTTTGAGTCAGTTAGTGGTGTTGACCTTGAATACCACTATGCAGTCTAA 1017 0.4907 MEDQAHSQNSTLQNGSEINKEQVAAAAAAGGGGNTAPESAVGEASVAAGSGQVVKRGRGRPRKNQANGSHPPPATPPQPELAIQLYGGGDVVKRGRGRPRGSGKLQILASIGGLVTETAGGGFTPHVVNVNTGEDVVSKIISFFQKGPRAVCILSANGPISSVTIRPRGATNILRYEGHFEILSLIGSWTSSRDGGACMKNSQLTVSLAKPDGTVFGGNVESSLIAAGPIQLILATFKQNISNQIKKRRSNGSSNVPSMAGNPDSTKVDLQKVPKLTEGESSCPSPTSTLRLIAPSNGLVDDPITETTNAVPENVTIADKNMHFESVSGVDLEYHYAV* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0940 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 122 243 - -
Lja3g0940 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 324 IPR039605 GO:0003680
Lja3g0940 338 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g0940 338 MobiDBLite consensus disorder prediction 246 265 - -
Lja3g0940 338 MobiDBLite consensus disorder prediction 246 267 - -
Lja3g0940 338 CDD DUF296 124 237 IPR005175 -
Lja3g0940 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 125 238 IPR005175 -
Lja3g0940 338 MobiDBLite consensus disorder prediction 1 82 - -
Lja3g0940 338 ProSiteProfiles PPC domain profile profile. 120 258 IPR005175 -
Lja3g0940 338 PANTHER DUF296 DOMAIN PROTEIN 1 324 - -
Lja3g0940 338 Gene3D - 125 253 - -
Lja3g0940 338 PRINTS AT-hook-like domain signature 91 102 IPR017956 GO:0003677
Lja3g0940 338 PRINTS AT-hook-like domain signature 55 65 IPR017956 GO:0003677
Lja3g0940 338 SMART AT_hook_2 55 67 IPR017956 GO:0003677
Lja3g0940 338 SMART AT_hook_2 93 105 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0940 Lja-Chr3 9569886 9573153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0940 54 237 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 44.865 1.11e-42 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0940 - - gsj:114378162 281.952