Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0939 ATGGAAAAGCCTGCTGCGAGACCGAGGGGTCGTCCGCGGAAGAGGATTAAGGAGGAGGAGGAGGAGAAGGAAGGGAGATTGGTTGCTGATGCGAAGAAGACGAGATCGGTTGCGTTGGTTGGGAGGTATGTGCTGAAGGAGTTCTCGGGAAACGGTGTTTTTCTCGGGAAAATTGTGTATTATGAGACTGGGTTGTATCGGGTGAATTACGAGGATGGGGATTCGGAGGATTTGGATAGCGATGAGATACATCCGATTCTTCTCAGGGAGAATGATTTTGATGGTGATTTGACCAAGAGGAGGCGGAAGCTGGACCAATTGGTGGCGAGGAAGAAGGCCAAGGCTGCTGCTGCTGCTGCGCCGGAGAAGGAGAAGGCTTCTGCTGGGTCGAAGAAGGAGGAATCTGTTGCTGCTGTGCCTGTTTCGAGTGAATTGAACGGTGAAAATGGCGTGGGAGGAGAAAATGGTGTGGTGGAAGCTGATTCCTCGAGTGACTCGGGTTTGAAGGGTGGGAATTCTGGTTCTGATACTGAGATGTCACTTATGCTGCCTGCATTTGAGTTGCCGCCGTCATCTGGAACAATTGGCGTGCCTGAGCGAAGTGTGTCGCACCTGTTTGCTGTTTATGGATTCCTGAGATCATTCAGCACTTGCTTGTTTCTCATGCCCTTTACTTTGGAGGACTTTGTGGGTTGTCTTAACTGGCGAGCCCCGAACTCCTTGTTTGACTCCATTCATGTTTCCCTGATGCGCGCGTTGAGGCGCCATCTTGAAACCCTCTCTTCTGAGGGCTCGGAGCTGGCACTGCAATGCTTTAGGTGCAATGATTGGAGCTTGCTCGATACATTGACTTGGTCCCTTTTTGTGATTCAGTATTTAGTATTTAGTGGATACACAAAAGAACCTGAATGGAAAGGATTTAATGACGAGGTTTTGAATGGCGAGTATTATTTATTGCCTGTAAGTAGGAAGTTAATGATATTGCAAATTCTTTGTGATGATGTTTTGGAATCCGAGGACGTAAAAGCTGAAATGAACATGCGGAAGGAATCAGAGGTTGGGATGGATTATGATGCTGAAGAAGATATTCTTCCTGCAGAAACTGGGCCGAGAAAAGTTAATCCAAGATATGCCAAGACTTCTTTTACCGAGGATAAAGAAGCTATGAAATCTGTTTCTGCATCAAATGCTGTGAACCAACCTGGTAACTCTATTTCACATTTCAGGGATACAGAAAGTACTGACGATGGGGATGTTGACCGAAATGGAGATGAATGTCGCCTTTGTGGTATGGATGGGACCCTGCTTTGTTGTGATGGGTGTCCCTCGGCTTATCATTCTAGGTGTATTGGTGTGATGAAAATGTTTATACCAGATGGGCCATGGTACTGTCCAGAGTGCAAAATCAACTTGACTGAGCCAACCATTGCGAAGGGAACATCACTTAAAGGGGCTGAAATATTTGGAAGAGATTCGTATGGGCAACTCTTCATGGGTACTTGCGGCCACTTACTAGTGCTCAATACTGGCAACAATGAATTTCATCTTAAATATTACAATCAGAGTGACATTCCTAAAGTTGTCCAAGTGCTTTATGAAGCTGTGCAGCATAGGCCAATATACGATGGTATTTGCATGGCAGTGTTGCAATATTGGAATCTTCCAGCAAATTTCTTGCCTTCGGTTTCAACTGAAACAAATGTAAACTCAGAAAATATGAAGGAAGAAACAAAATGCTCTTCATTACTTCCTCCTCAAAGAGAAGACAACCCTATATCTGTTAGTTTGGTGAAGGAAGAATACCCTACAGGCCCTGTGAGTTTGATTCACAGTGATAATATGGTGCCATCTCATGATGTTTCATCTGTTATCACTCAAAGTCCTGCTCCTGAAAGCAGCGGCAATGCTGGCGGTAAAGAGTGCTCTGCTGTGAATATGACGATTCCTGAGGAAACTGGGATGGAGTTGGTCATTTCAGCTGGTTCTGTTTCTATTAGTCATCAGTCTGACATGAACTACCAAAATTCTGTTAATATCTCAAGTGCAGAAGATCTTGCTAACTGCTCTTTGGGAAACAGCTCATCTGGTGATTATTGCCATGCAAATAATATGAGGTTGCCTCTGAATTTTTCTTTGCAAACCAAAGAAAGCACCCAAGTAGGTTTTGGATACATGGGTTTTTCCTATAAACCTCAGTCGTACATAAATTACTACATGCATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTTGCCAGTCTTTCTTCAGAGGAATCTAGGTCAGAAAGTCACGGGTCTGACAATCAGAGGAAAACTGTAGCTGCAATCACTTATTTGCAAGCAAAAGCATTCTCTCAAACAGCTGCACGCTTTTTTTGGCCATGTTCTGAAAAAAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGTATTTCGTGTAAAGCTACTGTTGTTAGCAAGAGAGGATGCATGTTAAATCATGCTGCCATATGTGCCACAAAAAGTGCTATGAAAATCCTTGCTGGTTTTTCCCCTATAAAGAGTGGAGTGGGGATCCTTCCTAGCATCGCAACTTACATTATATACATGGAGGAATGTTTACGTGGTTTAATTGTTGGGCCCTTCCTAAATGCAAGCTATAGAAAGCACTGGCGTAAGCAGGTGGAACAAGCAACAACATTTAGTGCTATCAAGCCGCTTTTACTTAAACTTGAGGAGAACATTCGGCTCATTGCTTTTTCTGGAGATTGGGTTAAGCTGATGGATGATAGGGTGGTTGAAATTCCCATTACACAAAGTGCCGCATCTACTCTTGGAACAGCTCAGAAACGTGCACCAAGTGGGAGGCGTTACAAGAAGCGGTTAGCTACTGATGAGGCTACTGTTGATGATGGTAGCAATAAAAACTGTGTGTGGTGGCGTGGTGACAAATTTACCAAATATATATTCCAGAAAGCATCTTTGCCAAAATCCATGGTCAGAAAAGCAGCTCGCCAAGGTGGTTTGAGAAAAATTTCTGGTATTTTCTATGCTGATGGTTCTGAAATCCCTAGAAGAAGCAGACGACTAGTTTGGAGAGTCTATGTTCAAATGAGTAGGAATGCATCCCAGCTAGCACTTCAGGTCAGATATTTAGATTTGTACCTCAGATGGAGTGATCTGATTCGTCCAGACCAGAACATTCAGGAGGGCAAAGGTCAAGATACTGAAGCCTCTGCTTTCAGAAATGCAAATATTTGTGACAAAAAACTTGTAGAGGGAAGAAGTTGTTATGGAATAGCTTTCGGGGGCCAAAAGCATCTTCCTTCTCGGGTGATGAAAAGTATTGTTGAAATTGAGCAATGTACAGAAGGAAAGGAGAAGTACTGGTTTTCAGAGACACGCATTCCTTTATATTTGGTGAAAGAGTATGAAGCAGCTAATGAAAAAGTTGTATGTGATAAAGAGTACTGCAATGATGCATCTCAGTTGCACAGAAGGCCCTGCAAGGATATATTTTTTTACCTTGCATGCAAGAGTGAGAAGATGGACATGGTCCCGTGTTCTGCATGTGGTACAACTTTTTCAATTCGGAATGCTTACCAGTGTAATGCTTGTAAAGGTTATTGTCATGAGGGCTGTTCTGTAAGTTCAGCCTCTGCAAGCAAGGAAGTTGAGTACTTGACAACATGCAAACGATGTTACCATGCCAAATTACTTGCTCTAAAAGCGACTAGTAATGAATCTCCTACCAGTCCTTTACTCTTACAAGGACAAGTAAAAAGCTCTGGCAGTGTTTTTAAGGGACCAAGGACAAAGGGTAGACATCCGGACGTGAAAGAAGTTACTTCTGTAGCAGTGGTAAAGGGACCAAGGACAAAGGGTAGTCATCCTGACGTGAAACAAGTTACTCCTGTAGCAGTGGTAAAGGGACCAAGGACAAAGGGTAGTCATTCTGATGTGAAACAAGTTTCTTCTTTAGTGATAAAGGGACCAAGGCCTAAAGGTCATGATCAAACACCGAATTCTACCAGGACAAAAAATAGTGATCCTGAAATGAAACAAGCTGCTTCTTCCACTTCCACAGCAAAAACCCGCAAGAATTGTTCATGGGGTGTTATATGGAAAAAGAAACCTAATGAAGAGACAGACATGAATTTTAGGATAAAAAACATACTTCTAAAGGGTGAATCAGGCGTGGATGAACTCGGACCAGTTTGTCACTTATGCAAAAAGGCATATAGATCTGATCTAATGTATATTCGATGTGAGACATGCGAAAATTGGTATCATACTGAAGCTGTTGAGCTTGAAGAATCCAAAATTCTTAGTGTGTCTGGTTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGTCTGTCCTTACTCTGATTTCAAGCCTCAAACCGAAGAGGTTAAGAAGTCACGCTCAAGGGGTACAAAGAAAGAATATTCTGGTGCAGATTCTGATTCTGCAACATTTTCTGAGATGAAAGAGTATGAACCTGCTACTCCTGTCTTTCCTATGGAGAATGATCCTTTACTTTTCTCTCTTCCAAATGTTGAGCTGGTTACAGAACCTGAGTTAGATGTGGATATTGAGAGGAACACTTTCTTTGAGCCAGGGCCTCAGAAACTACCAGTGAGAAGGCATGTTAAGCGTGAGTGGGATGGTGATGGTGATGGTTCCTTTGGAGGCATACCTGTACATGCTGATTTCTCAACACAGAGTGAAGCAGGTAATCTATCCAACCCTGCAGATTTGTCACCTTTAGAATATGACTCTGCTGTGCACTTCGACAGCAATCTACTGAACACTTCTGAAAGTGTAAATTATGATTGCACGGACTTTGAACCCCATACCTACTTCTCTTTCAATGAGTTGCTGCCAGATGATGGTAGCCAGTTTGAGGGAGTTGATGTGTCTGGAGACTTGTCAGGATATTTGGAAAATTCTGCTACCCTTGTTCCTGAAGATTTTGGAGGTTTTAGTTCAGTCGATATTGGAGAACCTGCAAATCCCTCTCAAGATAATGACTATAGTTGTTGGAGATGTTCACAAATGGAACCAGCCCCTGATCTCTGTTGTGAAATTTGTGGTTATTTGGTTCACAGCCAATGTTCACCTTGGCTTGAATCTCCATCTAGGCTTGGAAGTTGGAGGTGTGGGGAATGCCGGGAATGGCAATAG 5175 0.4309 MEKPAARPRGRPRKRIKEEEEEKEGRLVADAKKTRSVALVGRYVLKEFSGNGVFLGKIVYYETGLYRVNYEDGDSEDLDSDEIHPILLRENDFDGDLTKRRRKLDQLVARKKAKAAAAAAPEKEKASAGSKKEESVAAVPVSSELNGENGVGGENGVVEADSSSDSGLKGGNSGSDTEMSLMLPAFELPPSSGTIGVPERSVSHLFAVYGFLRSFSTCLFLMPFTLEDFVGCLNWRAPNSLFDSIHVSLMRALRRHLETLSSEGSELALQCFRCNDWSLLDTLTWSLFVIQYLVFSGYTKEPEWKGFNDEVLNGEYYLLPVSRKLMILQILCDDVLESEDVKAEMNMRKESEVGMDYDAEEDILPAETGPRKVNPRYAKTSFTEDKEAMKSVSASNAVNQPGNSISHFRDTESTDDGDVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPDGPWYCPECKINLTEPTIAKGTSLKGAEIFGRDSYGQLFMGTCGHLLVLNTGNNEFHLKYYNQSDIPKVVQVLYEAVQHRPIYDGICMAVLQYWNLPANFLPSVSTETNVNSENMKEETKCSSLLPPQREDNPISVSLVKEEYPTGPVSLIHSDNMVPSHDVSSVITQSPAPESSGNAGGKECSAVNMTIPEETGMELVISAGSVSISHQSDMNYQNSVNISSAEDLANCSLGNSSSGDYCHANNMRLPLNFSLQTKESTQVGFGYMGFSYKPQSYINYYMHGDFAASAAAKFASLSSEESRSESHGSDNQRKTVAAITYLQAKAFSQTAARFFWPCSEKKLVEVPRERCGWCISCKATVVSKRGCMLNHAAICATKSAMKILAGFSPIKSGVGILPSIATYIIYMEECLRGLIVGPFLNASYRKHWRKQVEQATTFSAIKPLLLKLEENIRLIAFSGDWVKLMDDRVVEIPITQSAASTLGTAQKRAPSGRRYKKRLATDEATVDDGSNKNCVWWRGDKFTKYIFQKASLPKSMVRKAARQGGLRKISGIFYADGSEIPRRSRRLVWRVYVQMSRNASQLALQVRYLDLYLRWSDLIRPDQNIQEGKGQDTEASAFRNANICDKKLVEGRSCYGIAFGGQKHLPSRVMKSIVEIEQCTEGKEKYWFSETRIPLYLVKEYEAANEKVVCDKEYCNDASQLHRRPCKDIFFYLACKSEKMDMVPCSACGTTFSIRNAYQCNACKGYCHEGCSVSSASASKEVEYLTTCKRCYHAKLLALKATSNESPTSPLLLQGQVKSSGSVFKGPRTKGRHPDVKEVTSVAVVKGPRTKGSHPDVKQVTPVAVVKGPRTKGSHSDVKQVSSLVIKGPRPKGHDQTPNSTRTKNSDPEMKQAASSTSTAKTRKNCSWGVIWKKKPNEETDMNFRIKNILLKGESGVDELGPVCHLCKKAYRSDLMYIRCETCENWYHTEAVELEESKILSVSGFKCCKCRRIKSPVCPYSDFKPQTEEVKKSRSRGTKKEYSGADSDSATFSEMKEYEPATPVFPMENDPLLFSLPNVELVTEPELDVDIERNTFFEPGPQKLPVRRHVKREWDGDGDGSFGGIPVHADFSTQSEAGNLSNPADLSPLEYDSAVHFDSNLLNTSESVNYDCTDFEPHTYFSFNELLPDDGSQFEGVDVSGDLSGYLENSATLVPEDFGGFSSVDIGEPANPSQDNDYSCWRCSQMEPAPDLCCEICGYLVHSQCSPWLESPSRLGSWRCGECREWQ* 1725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0939 1724 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 303 346 IPR028942 -
Lja3g0939 1724 CDD PHD_SF 1676 1720 - -
Lja3g0939 1724 MobiDBLite consensus disorder prediction 1331 1359 - -
Lja3g0939 1724 ProSitePatterns Zinc finger PHD-type signature. 426 467 IPR019786 -
Lja3g0939 1724 PANTHER PHD FINGER FAMILY PROTEIN 2 1300 - -
Lja3g0939 1724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 477 IPR013083 -
Lja3g0939 1724 SUPERFAMILY FYVE/PHD zinc finger 1668 1722 IPR011011 -
Lja3g0939 1724 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1316 1721 - -
Lja3g0939 1724 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 2 1300 - -
Lja3g0939 1724 MobiDBLite consensus disorder prediction 1 26 - -
Lja3g0939 1724 CDD PHD_SF 1400 1447 - -
Lja3g0939 1724 PANTHER PHD FINGER FAMILY PROTEIN 1316 1721 - -
Lja3g0939 1724 MobiDBLite consensus disorder prediction 385 417 - -
Lja3g0939 1724 MobiDBLite consensus disorder prediction 1466 1485 - -
Lja3g0939 1724 SMART PHD_3 1181 1229 IPR001965 -
Lja3g0939 1724 SMART PHD_3 425 468 IPR001965 -
Lja3g0939 1724 SMART PHD_3 1400 1448 IPR001965 -
Lja3g0939 1724 SMART PHD_3 1676 1721 IPR001965 -
Lja3g0939 1724 MobiDBLite consensus disorder prediction 1466 1480 - -
Lja3g0939 1724 MobiDBLite consensus disorder prediction 118 174 - -
Lja3g0939 1724 MobiDBLite consensus disorder prediction 159 174 - -
Lja3g0939 1724 Pfam PHD-finger 426 468 IPR019787 -
Lja3g0939 1724 ProSiteProfiles DDT domain profile. 199 259 IPR018501 -
Lja3g0939 1724 SUPERFAMILY FYVE/PHD zinc finger 1393 1454 IPR011011 -
Lja3g0939 1724 CDD PHD2_CHD_II 426 467 - -
Lja3g0939 1724 SMART testlast3 199 259 IPR018501 -
Lja3g0939 1724 MobiDBLite consensus disorder prediction 1304 1359 - -
Lja3g0939 1724 ProSiteProfiles Zinc finger PHD-type profile. 423 470 IPR019787 -
Lja3g0939 1724 Pfam DDT domain 201 256 IPR018501 -
Lja3g0939 1724 MobiDBLite consensus disorder prediction 387 408 - -
Lja3g0939 1724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1393 1454 IPR013083 -
Lja3g0939 1724 SUPERFAMILY FYVE/PHD zinc finger 412 473 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0939 Lja-Chr3 9547233 9557685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0939 289 576 EF-hand Containing Proteins AT5G22760 51.007 7.46e-79 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lja3g0939 DDT 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0939 - - lang:109351702 2116.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0939 3 9547233 9557685 Lja3g0939 3 9547233 9557685 ECH