Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0933 ATGTCACGCCGTGGAGGAAGACAACAACCCGATCCCCGCCGTGATCAACCGTTTCCGACGCCGTCCCCTCATCCAGATGCAGGCACAGGCCGCGGCCGTGGCCGTGCACGGGCGCCACCTTCTCAACAACCGCCATCATCGTCCTCTCATTCTCCCGCTCCTGTCATCGGCGCTCCGATTTCTCCAGCGCCTGTTGTTTCCGCGCCGATTTCCGCGCCATCGCCCCCGCCGCCTTCTCCGGTTCCGGTCGACGCTCTGAGTTCCGAGGTCGAGCAGAAACTCGCATTGCGACCGGCAGCGCCGTCGTCGACGAAGGCTATTAGGTTCCCGGACCGGCCAGGGTTCGGTCGATTAGGGAAGAAGATACAAGTCCGAGCGAATCACTTTCAGTTGCAAGTCGCTGAACGCGATCTTCACCATTACGATGTTGCTATCACTCCTGAGATTACTTCGAAGAAGGTGACCAGAGAGGTGGTGAGTCAGTTGATAAAGATGTACAAGGAGTCGGTGTTGGGGAATCGCTTACCGGTTTTTGATGGACGGAAGAATCTCTTCACGGCGGGTCCGTTGCCGTTTTCATCGAAGGAATTTGTGGTGAAGTTGGAAGATGATAGGCCGAAAGCCTCGTCCTCTTCTGGTTCTAAAAAAGAGAAACGGGAGCGGCAATTTAAGGTCACTATACGGTTTGCTGCGAAGGTTGACCTTCACCATCTTTTTCAGTTTCTCGGCCGTCAACAGTTAGACTGTCCTCAGAACACCATTCAAGCACTCGATGTCGCTTTGCGGGCAACCGCATCTGAGAAGTATAATGTTGTGGGGAGGTCATTTTTCTCGCCTGAGTTGGGGCAAACCGGTCCCCTTGGTAGCGGTACGGAGTACTGGAGAGGATACTATCAGAGCCTCCGACCGACTCAGATGGGGCTTTCTCTAAATATTGATGTGTCTGCTAGGGCTTTCTTCGAACCCATTCCTGTGACAGAGTTTGTGCCTAAACATTTTAGGAATATTAATTTTTCAAGGGATCAAGATCGTGTCAAGGTGAAGAAAGCTTTGAGAGGCATCAGGGTGGATGTTTTTCTTGGGGAATGCAAGAGAAGTTATAAAATTTCTGGGGTTTCTAGAGAACCAGTAAAAGATTTAATGTTTACCCTAGATGATCAGAAGACTAAGAAATCTGTTGCTCAATACTTCACTGAGAAATATAAAGTGACGTTGAAGCATGCAAATCTTCCTGCTCTTCAAGCTGGCAGTGACACTAAACCTATCTATTTGCCCATGGAGGTTTGCGTAATTGCTGCGGGGCAAAGATATACAAAAAGGCTTAATGAGGAGCAAGTTACTGCTCTTTTAAGGGCAACTTGTCAGCGTCCCCAAGATAGGGAGAATTATATTAAACAAATTGTCAAGCAACACAATTTCAACAATGACAAGTTTGTCCGTGAGTTTGGTATCAGTGTAAAAGAGGATCCTACCTTGCTTAATGCTCGTGTTTTACCTCCTCCAAGGCTTAAATATCATGAATCAGGCAAAGAACCAAGAGTTGATCCGTGGATGGGTCAATGGAATATGATTAATAAGAAAATGGTTGATGGTGGGAAGGTGGAACATTGGAGCTGTCTCAATTTTTCATCAAGATTGAGGCCAGATTTGCCATCCATATTCTGTGATGAATTGCGTAGTATGTGCACAAGCAAGGGGATGGTTTTCAACCCTCAGCCTTTGGTTCCAATAAAAACAGTTAACCCTTTGCAAATAGAGTCAGCACTGCAGAATCTTCACAAGCAGTCTATAACAAACCTGGCAAATATGAAGCAGCAGGGTAGATTACAGTTGCTGATTATAATTTTACCTGATGTCAAGGGGTCCTATGGGAAAATTAAGAAAATATGTGAAACGGAGTTAGGAATTGTGTCTCAGTGTTGCCAGCCAAGGCAAGTTCAGAAGCTGAACAAGCAATATCTTGAGAACTTGGCGCTCAAGATAAATGTTAAGGTTGGTGGGCGAAACACAGTTTTAAGTGATGCATTTGATAGAAGAATCCCTCATGTGAGTGATAAACATACAATTATTTTTGGTGCGGATGTAACACATCCACAACCAGGGGAAGACTCAAGTCCTTCTATAGCTGCAGTTGTGGCTTCCATGGACTGGCCTTGGGTGACAAAGTACAAAGGCACTGTTTCTGCCCAGGCTCACCGAGAAGAGATTATTCAGGATCTCTTTACAACATTTGAAGATCCTAAGAGGGGACTTGTGCAGGGTGGGATTATTAGGGAGCTGATTCGTTCTTTTTACATAGCAAATGGTAAACGCAAGCCTGAAAGGATTATATTTTACAGAGATGGTGTCAGTGAAGGTCAATTTAGTCAGGTTTTGTTGTATGAGATGGATGCAATAAGAAAGGCTTGTATGTCACTAGAGGATGGGTACTTGCCTCGTGTTACTTTTGTGGTTGTCCAGAAAAGACATCACACCCGTCTTTTCCCTGCTGATCACAGGAGTCGTGATCAGATGGATAAGAGTGGAAATATAATGCCAGGAACTGTTGTTGACACTTCGATTTGCCACCCAAGGGAGTTTGATTTTTATCTCAACAGTCATGCTGGAATTCAAGGAACTAGCAGACCTACCCATTATCATGTTCTGTATGATGAGAATAACTTTACAGCTGATGAGCTACAGGGGCTGACAAATAATTTATGCTACACGTATGCAAGGTGCACTCGATCAGTTTCAATAGTTCCTCCGGCATATTATGCACACTTAGCTGCTTTTCGAGCTCGCAGCTATATCGAAGGCGAATCGGAAATGGGTTCTGCTAGTGCGGGTGCTGGTGGTGCAACCAGGAGCAATGTTGAGATAAAATTGCCTGCAATCAAGGATAATGTGAAAGATGTTATGTTCTACTGCTGA 2913 0.4573 MSRRGGRQQPDPRRDQPFPTPSPHPDAGTGRGRGRARAPPSQQPPSSSSHSPAPVIGAPISPAPVVSAPISAPSPPPPSPVPVDALSSEVEQKLALRPAAPSSTKAIRFPDRPGFGRLGKKIQVRANHFQLQVAERDLHHYDVAITPEITSKKVTREVVSQLIKMYKESVLGNRLPVFDGRKNLFTAGPLPFSSKEFVVKLEDDRPKASSSSGSKKEKRERQFKVTIRFAAKVDLHHLFQFLGRQQLDCPQNTIQALDVALRATASEKYNVVGRSFFSPELGQTGPLGSGTEYWRGYYQSLRPTQMGLSLNIDVSARAFFEPIPVTEFVPKHFRNINFSRDQDRVKVKKALRGIRVDVFLGECKRSYKISGVSREPVKDLMFTLDDQKTKKSVAQYFTEKYKVTLKHANLPALQAGSDTKPIYLPMEVCVIAAGQRYTKRLNEEQVTALLRATCQRPQDRENYIKQIVKQHNFNNDKFVREFGISVKEDPTLLNARVLPPPRLKYHESGKEPRVDPWMGQWNMINKKMVDGGKVEHWSCLNFSSRLRPDLPSIFCDELRSMCTSKGMVFNPQPLVPIKTVNPLQIESALQNLHKQSITNLANMKQQGRLQLLIIILPDVKGSYGKIKKICETELGIVSQCCQPRQVQKLNKQYLENLALKINVKVGGRNTVLSDAFDRRIPHVSDKHTIIFGADVTHPQPGEDSSPSIAAVVASMDWPWVTKYKGTVSAQAHREEIIQDLFTTFEDPKRGLVQGGIIRELIRSFYIANGKRKPERIIFYRDGVSEGQFSQVLLYEMDAIRKACMSLEDGYLPRVTFVVVQKRHHTRLFPADHRSRDQMDKSGNIMPGTVVDTSICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENNFTADELQGLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARSYIEGESEMGSASAGAGGATRSNVEIKLPAIKDNVKDVMFYC* 971
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0933 970 Pfam PAZ domain 337 449 IPR003100 GO:0005515
Lja3g0933 970 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 969 - -
Lja3g0933 970 SMART DUF1785_2 270 322 IPR014811 -
Lja3g0933 970 MobiDBLite consensus disorder prediction 1 89 - -
Lja3g0933 970 CDD PAZ_argonaute_like 322 432 - -
Lja3g0933 970 MobiDBLite consensus disorder prediction 66 83 - -
Lja3g0933 970 Gene3D - 497 673 - -
Lja3g0933 970 Pfam Mid domain of argonaute 516 594 IPR032473 -
Lja3g0933 970 CDD Piwi_ago-like 477 931 IPR045246 -
Lja3g0933 970 SMART Piwi_a_2 611 932 IPR003165 GO:0003676
Lja3g0933 970 Pfam Piwi domain 612 931 IPR003165 GO:0003676
Lja3g0933 970 ProSiteProfiles PAZ domain profile. 341 433 IPR003100 GO:0005515
Lja3g0933 970 Gene3D paz domain 317 437 - -
Lja3g0933 970 MobiDBLite consensus disorder prediction 40 54 - -
Lja3g0933 970 ProSiteProfiles Piwi domain profile. 611 932 IPR003165 GO:0003676
Lja3g0933 970 SUPERFAMILY Ribonuclease H-like 601 932 IPR012337 -
Lja3g0933 970 Gene3D - 679 970 IPR036397 GO:0003676
Lja3g0933 970 Pfam Argonaute linker 1 domain 272 320 IPR014811 -
Lja3g0933 970 PANTHER ARGONAUTE108 32 969 - -
Lja3g0933 970 SMART PAZ_2_a_3 327 458 IPR003100 GO:0005515
Lja3g0933 970 SUPERFAMILY PAZ domain 318 474 IPR036085 GO:0005515
Lja3g0933 970 Pfam Argonaute linker 2 domain 459 505 IPR032472 -
Lja3g0933 970 Pfam N-terminal domain of argonaute 120 261 IPR032474 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja3g0933 Lja-Chr3 9489877 9495329 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0933 60 970 Eukaryotic Initiation Factors Gene Family AT1G48410 56.959 0.0 1061
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0933 K11593 - gmx:100799033 1289.25
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0933 3 9489877 9495329 Lja3g0933 3 9489877 9495329 ECH