Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0920 ATGAGATTCCAGAACCGCAAAATGTTCCTATCCAACGAGGACATTCCCGTCCCCCCTCTCCACCGCACCACCCCTTCCCCACCACCAGCTGCCCGGAAGCACCTCCGTCCTCTCCTCTCCTCCGACGTGGCCTACACCTTCCTCATCGTCTTCTCAGCTCTCTTCTTCATCACTGTCCTCCTCCTGGCCGCGCGCGAGTTCTTCCTTCGCTACCTCCGCCGGAGCCAGCACCCGCCGTGCCGGAGGGATGACGACCTCGCCGACAAGTCGCTGCAGGTGTGCTCCTACGGCAGCATGGACGACACAAGGGCTGCGCAGGACTGCGCCGTCTGTCTGGAGGAGTTCCAGGAAGGGGACACCGTGAAAGTGACGCCACAGTGCGGGCACGTGTTTCACCCTAGGTGCATTGACACGTGGCTCATTAATCACGTGACCTGCCCTGTTTGCCGGTGCGCTAGGATTTACAATGGGATCCCCGATGATCGCGCGGCCGAGGATGGCGGAGCCAGTAGACAAGCGGGGTAG 525 0.6171 MRFQNRKMFLSNEDIPVPPLHRTTPSPPPAARKHLRPLLSSDVAYTFLIVFSALFFITVLLLAAREFFLRYLRRSQHPPCRRDDDLADKSLQVCSYGSMDDTRAAQDCAVCLEEFQEGDTVKVTPQCGHVFHPRCIDTWLINHVTCPVCRCARIYNGIPDDRAAEDGGASRQAG* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0920 174 CDD RING-H2_EL5_like 107 150 - -
Lja3g0920 174 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 44 152 - -
Lja3g0920 174 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Lja3g0920 174 Pfam Ring finger domain 107 150 IPR001841 -
Lja3g0920 174 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 44 152 IPR044675 -
Lja3g0920 174 SUPERFAMILY RING/U-box 107 153 - -
Lja3g0920 174 SMART ring_2 108 149 IPR001841 -
Lja3g0920 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0920 Lja-Chr3 9380667 9381191 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0920 39 166 C3H Transcription Factor Family AT2G27940 34.783 7.69e-21 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0920 - - gmx:102663476 122.094