Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0919 ATGGCGATTGCTGGTCTGCGCAGTGTGTCTGTGCTTGATTCGTCTTTCCTAAGGGACTCCCATTCTCAGTCGTCGAGGAGAGGGGGAGATGGTGGAAGAAGAGGAAGCACCCGGTCGTCTTCGCTCTTGCAAATGTGGCGAGAGCTTGAGGATGAGCATGCGGTGACTCAAGTTCGAGGAAGGCCTGGCGAAGTGCTACTTGAACAAAGGGGTGGTGTTGGGTTGAATGCTGACCTGCCACGGGAAGATAGCCAAGAGATTGGACTGGGACGTGTTTTAGAGGATGTAATTTTGGGTGAGAATGAATCTGAAACATGGTCACAGTCACACAGCCATAACGAGTCCCATGATGACCGTGAGGATTTGAACAATTCTAGTTGTGGAAACTCATCTGACTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGAAAATTTTCAGGGAATGGATGAATAGTGGTGCTCGGGATCATGGATCAAGTATTCCCCGGAGAAATGACAGTCCAAGGGGAGAATGGCTTGGAGAAACTGAGCAGGAAAGGGTGAGAATTATAAGGGAGTGGGTGCAAATGAGTAGCCAGCAGAGAAGTGTTTCTTCTGGGGATAATAGGGAAGAACCATCTGCTGAAATTGATACACAGATGGAACGTGTACGTGATGGATTTGTTGTTAACCAGAGTGAGGGCCAAATTGAGCTTACACGGAGGGGTATCCGTAAGTTATGCGGCAGGCAAGTTATGCTTGACATGCTTAAGAAGGCTGAGAGGGAAAGGCAAAGAGAAATTCAGGAGTTGTTGGATCATCGTTCTGTATCTCAATTCCCTCATCGTAATCGCATTCAGGCATTACTTAGAGGCAGGTTCTTGAGAAATGATAGATCTGTTGATCATAACAGGTCAACTTCTGTTGCAGAGAGTGAATTAGGCTTTTTGAGGCGAAAACAAACTGTATCGGGTCTAAGGGAAGGATTCGTCTCTAGGAAGGACAACACTGGTTGCAGTCAAGCAACCAGCAACCTGTCCGATACTTCATCTAACATTGATGCTGATTTCAATGCTAATGTACAAACTGGAGCAAGCAGTTCACATTTGGTCCTAAGTATACATTCTGAACAGTCTGGACCTGATAACGAAGGAAGTAATGGACTTGGGATATCAGGGGGTCAGAACTGTTTTCAAGTAACTGGATGTGAGAATTTAGATAGGCAAGGTTCCAGTGCTCTTGCAGAAGATCGGTTGCAAATTGAGCCTGTTGATTGGCAGCCATCATTCAGTGTTGGGGTTGAAAGGAGTGATGATGCTGGGCAAAATGCTGAAGTGATGTCAACTCAGGATACAGCTAATGAACTTACCCATCAAAGCTTACAAATTGAAGATTCTGAGCATAGTGATAATCAGGAATTTAGTGAGGTACATAATGAGACATCGGAGCTGGGTGATATAAGAAATGGTGAAAACAGCTCATCAAATGACAACAATCATAATGAGGGCAACACTGTTGATATGAATTGGATTGATGAATCTAGTGCTCTAGAAGGAGAACAGCCGGAAGAAGTTATTCAAAATGAAGGAAGCGATTGGCATCAGAGTAACACTGAATGGAGAAATAGCACTGATGAAAGTGTTGATGATAATCAACACAGTAATACAACAAATGAGTGGCATGAGAACAGTTTGGCAAATGAGGATGGAGAAAACTCTCGGCTTCAAGAGGCTCCTGAAGTGTGGCAGGAAGACAGTGGCTTCCAAGAAGCCGTGGAAAATTGGTTGGGAGGGCCTTCTAATCATGACAGTGCTCCAGTTGGTAGAGTTCATGGATTTTATTTTCCTGATGATGACCATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGAGTCTCTAATCTCCTTCACAGTAGTTTCCGTGCGAGTCTTGACCAGTTGGTACAATCATATGTTGAAAGGCAAGGCCATGCTAACATGGAGTGGGAGCTGCAAGAGACAACCCCTTCTTCTGCCTCGGTAGAACAAGACCTTGAGCAGCAGAGTAGAGATCAGATTGTTGATCAGGAGGATACTATTAATAGTCCACTTAACTTGCCCTCTTTACCAATACCTCCTCCTTTGCCTCTTTGGGACCAGCACCATCATCGTGATAGCTGGCAACATAATGACATAAATAATCAGCGCCTAGGAATGGATTGGGAGATTGTCAATGACTTGAGAATTGACATGGCCAGATTACAGCAAAGAATGAATAATATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTTGAGTTGCAGCGCTCAATAAGACAAGAAGTTTCTGCAGCTCTCAATCGCTCAGCTGGTTCATCAGGAACACATGACTGTGAGTCACCGGATGGAAAATCGAAGTGGGAATGTGTGAGAAAAGGACTTTGCTGTGTTTGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGTACATGTTCAAAATGTGCTAATGAGTTGCTTCAAAATGGAAGGAAATGCCCTATGTGTCAAGCGCCTGTGGTGGAGGTGATACGTGCTTATTCTATTCAATAA 2571 0.4446 MAIAGLRSVSVLDSSFLRDSHSQSSRRGGDGGRRGSTRSSSLLQMWRELEDEHAVTQVRGRPGEVLLEQRGGVGLNADLPREDSQEIGLGRVLEDVILGENESETWSQSHSHNESHDDREDLNNSSCGNSSDLGEVERERVRKIFREWMNSGARDHGSSIPRRNDSPRGEWLGETEQERVRIIREWVQMSSQQRSVSSGDNREEPSAEIDTQMERVRDGFVVNQSEGQIELTRRGIRKLCGRQVMLDMLKKAERERQREIQELLDHRSVSQFPHRNRIQALLRGRFLRNDRSVDHNRSTSVAESELGFLRRKQTVSGLREGFVSRKDNTGCSQATSNLSDTSSNIDADFNANVQTGASSSHLVLSIHSEQSGPDNEGSNGLGISGGQNCFQVTGCENLDRQGSSALAEDRLQIEPVDWQPSFSVGVERSDDAGQNAEVMSTQDTANELTHQSLQIEDSEHSDNQEFSEVHNETSELGDIRNGENSSSNDNNHNEGNTVDMNWIDESSALEGEQPEEVIQNEGSDWHQSNTEWRNSTDESVDDNQHSNTTNEWHENSLANEDGENSRLQEAPEVWQEDSGFQEAVENWLGGPSNHDSAPVGRVHGFYFPDDDHVYSVELRELLNRRRVSNLLHSSFRASLDQLVQSYVERQGHANMEWELQETTPSSASVEQDLEQQSRDQIVDQEDTINSPLNLPSLPIPPPLPLWDQHHHRDSWQHNDINNQRLGMDWEIVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSIQ* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0919 856 Coils Coil 732 759 - -
Lja3g0919 856 ProSiteProfiles Zinc finger RING-type profile. 804 843 IPR001841 -
Lja3g0919 856 MobiDBLite consensus disorder prediction 152 173 - -
Lja3g0919 856 SUPERFAMILY RING/U-box 803 849 - -
Lja3g0919 856 CDD mRING-HC-C3HC5_NEU1 804 842 - -
Lja3g0919 856 MobiDBLite consensus disorder prediction 158 173 - -
Lja3g0919 856 MobiDBLite consensus disorder prediction 510 578 - -
Lja3g0919 856 MobiDBLite consensus disorder prediction 191 215 - -
Lja3g0919 856 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 856 - -
Lja3g0919 856 Coils Coil 242 269 - -
Lja3g0919 856 MobiDBLite consensus disorder prediction 17 39 - -
Lja3g0919 856 MobiDBLite consensus disorder prediction 455 477 - -
Lja3g0919 856 MobiDBLite consensus disorder prediction 107 123 - -
Lja3g0919 856 MobiDBLite consensus disorder prediction 541 555 - -
Lja3g0919 856 MobiDBLite consensus disorder prediction 102 135 - -
Lja3g0919 856 Pfam Zinc finger, C3HC4 type (RING finger) 801 848 - -
Lja3g0919 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 792 854 IPR013083 -
Lja3g0919 856 MobiDBLite consensus disorder prediction 421 440 - -
Lja3g0919 856 PANTHER PROTEIN, PUTATIVE-RELATED 1 856 - -
Lja3g0919 856 MobiDBLite consensus disorder prediction 520 534 - -
Lja3g0919 856 MobiDBLite consensus disorder prediction 478 498 - -
Lja3g0919 856 MobiDBLite consensus disorder prediction 201 215 - -
Lja3g0919 856 MobiDBLite consensus disorder prediction 455 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0919 Lja-Chr3 9367968 9373203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0919 804 850 C3H Transcription Factor Family AT3G06140 40.426 1.68e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0919 - - gmx:100804184 1260.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0919 3 9367968 9373203 Lja3g0919 3 9367968 9373203 ECH
Lja3g0919 3 9367968 9373203 Lja3g3657 3 72629236 72635661 ECH
Lja3g3657 3 72629236 72635661 Lja3g0919 3 9367968 9373203 PCT